BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0485.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309831|ref|YP_003773923.1| tRNA guanine-N(7)-methyltransfe...   473   e-135
gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspiril...    57   2e-09

>gi|300309831|ref|YP_003773923.1| tRNA
           guanine-N(7)-methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 252

 Score =  473 bits (1216), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/239 (94%), Positives = 234/239 (97%)

Query: 1   MSENKAGKPLFYDPSERRIRSFVTRAGRVSVAQGRALEELGPRFLVPYEKAPLDLAATFG 60
           MSENK+GKPLFYDPSERRIRSFVTRAGRVSV QGRALEELGPRFL+PY+KAPLDL A FG
Sbjct: 14  MSENKSGKPLFYDPSERRIRSFVTRAGRVSVGQGRALEELGPRFLLPYDKAPLDLEAAFG 73

Query: 61  RQAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGELDNVRIIQHD 120
           R+APTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEG L+NVRIIQHD
Sbjct: 74  RKAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGHLENVRIIQHD 133

Query: 121 AVEVLTNMIAPATLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYIHCATDW 180
           AVEVLTNMIAP TLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGY+HCATDW
Sbjct: 134 AVEVLTNMIAPDTLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYLHCATDW 193

Query: 181 EEYAVQMLEVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA 239
           EEYA+QML+VLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA
Sbjct: 194 EEYAIQMLDVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA 252


>gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 11/171 (6%)

Query: 62  QAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGELDNVRIIQHDA 121
           QAP IL+ G G+G ++  +++  P+   IG++     +  +    G  E  N+  ++ D 
Sbjct: 60  QAPLILDTGCGVGLSTLHLASQHPDHFVIGIDQSADRLARHTHWDGP-EPANLCFVRADL 118

Query: 122 VEVLTNMIAPATLAGVH-VFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYIHCATDW 180
           V+     +        H + +P+PW K  H  RR     +   I   +A GG I C ++W
Sbjct: 119 VDYWRLALQAGVRPARHYLLYPNPWPKIGHLARRWQGHAVFPAI---VALGGQIECRSNW 175

Query: 181 EEYAVQMLEVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVW 231
             Y  +    LS    L         +  RPE R  T FE + L  GH +W
Sbjct: 176 RIYVEEFAAALS---QLSGQRIQAEAW--RPE-RPITPFERKYLASGHALW 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 802,750
Number of extensions: 34391
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)