BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0483.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...   511   e-146
gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...    95   8e-21

>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  511 bits (1317), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/290 (92%), Positives = 281/290 (96%)

Query: 1   MANVCSAGLDIGFASLSYAQIGFLGIVQGITELLPISSTAHMRVVPAFLGWHDPGSAFSA 60
           MANVCSAGLDIGFASLSYAQIG LGIVQGITELLPISSTAHMR+VPA LGWHDPGSAFSA
Sbjct: 1   MANVCSAGLDIGFASLSYAQIGLLGIVQGITELLPISSTAHMRIVPALLGWHDPGSAFSA 60

Query: 61  AMQLAALAAVISYFRRDVTAVTGGSLAAWRRRDFSDPMFKLAVAIILATIPIGIAGLALS 120
           AMQLAALAAVISYFRRDV+AVTGGSLAAWRRRDF+DPMF+LAVAIILATIPIGIAGL+LS
Sbjct: 61  AMQLAALAAVISYFRRDVSAVTGGSLAAWRRRDFNDPMFRLAVAIILATIPIGIAGLSLS 120

Query: 121 HVLNACGSPLRSLSVIGWSCIVMAGLLALSELVCRHRRSVDQMRLRDAFIVGLAQVGALI 180
           HVLNACGSPLRSL+VIGWSC+ MA LLA+SE+VCRHRRSVDQMRLRDA IVGLAQVGALI
Sbjct: 121 HVLNACGSPLRSLTVIGWSCVGMAILLAISEMVCRHRRSVDQMRLRDALIVGLAQVGALI 180

Query: 181 PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLQAWGVLL 240
           PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPL+AWGVLL
Sbjct: 181 PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLEAWGVLL 240

Query: 241 FGLAVASVSAFAAIWGLMKFLERFSTWPFIVYRAALGVFLLLGVSRGWLQ 290
           FGL VASVSAFAAIWGLMKFLERFSTWPFIVYRA LG FLL+ V++GWLQ
Sbjct: 241 FGLLVASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLLVAVAQGWLQ 290


>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 131/289 (45%), Gaps = 38/289 (13%)

Query: 24  LGIVQGITELLPISSTAHMRVVPAFLGWHDP------GSAFSAAMQLAALAAVISYFRRD 77
           +GIV+G+TE LPISST H+ +  + L +  P         F   +Q  A+ AV   +R  
Sbjct: 12  MGIVEGLTEFLPISSTGHLILANSLLQFTGPDLSKEKADVFEIVIQAGAILAVCWEYRVR 71

Query: 78  VTAVTGGSLAAWRRRDFSDPMFKLAVAIILATIPIGIAGLALSHVLNACGSPLRSLSVIG 137
           +  V  G     + +       +L V +I+A +P  I G   S  +        S+++  
Sbjct: 72  IATVLTGMFTDRKAQ-------RLVVNLIIAFLPAAILGFLFSRRIKEVLFNPVSVAI-- 122

Query: 138 WSCIVMAGLLAL-SELVCRHRRS--------VDQMRLRDAFIVGLAQVGALIPGVSRSGS 188
               ++ GL+ L  E   + R S        VD M   DA  VG+AQ  ALIPG SRSG+
Sbjct: 123 --AFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGA 180

Query: 189 TLTAALFLNFRREEAARFSFLLGLPAIALAGL----KELAVLLHAHIPLQAWGVLLFGLA 244
           T+   +     R+ A  FSF L +P +  A +    KE A+L  A +PL        G  
Sbjct: 181 TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPL-----FTVGTV 235

Query: 245 VASVSAFAAIWGLMKFLERFSTWPFIVYRAALGVFLLLGVSRG---WLQ 290
            A VSAF  +  L++++       F  YR   G+ +L+    G   W++
Sbjct: 236 AAFVSAFLCVRWLLRYISSHDFTIFAWYRIIFGIIVLVTAYTGVVAWVE 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 841,439
Number of extensions: 31778
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)