BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0482.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...   553   e-159
gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...    96   3e-21

>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  553 bits (1425), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/284 (96%), Positives = 281/284 (98%)

Query: 1   MDTLLALKALIMGIVEGLTEFLPISSTGHLILTNSLLQFTGPDFSKEKADVFEIVIQAGA 60
           MDTLLALKALIMGIVEGLTEFLPISSTGHLIL NSLLQFTGPD SKEKADVFEIVIQAGA
Sbjct: 1   MDTLLALKALIMGIVEGLTEFLPISSTGHLILANSLLQFTGPDLSKEKADVFEIVIQAGA 60

Query: 61  ILAVCWEYRVRIATVLTGMFSDRKAQRLVINLIVAFLPAAILGFLFSRRIKDVLFNPVSV 120
           ILAVCWEYRVRIATVLTGMF+DRKAQRLV+NLI+AFLPAAILGFLFSRRIK+VLFNPVSV
Sbjct: 61  ILAVCWEYRVRIATVLTGMFTDRKAQRLVVNLIIAFLPAAILGFLFSRRIKEVLFNPVSV 120

Query: 121 AIAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGA 180
           AIAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGA
Sbjct: 121 AIAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGA 180

Query: 181 TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVS 240
           TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVS
Sbjct: 181 TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVS 240

Query: 241 AFLCVRWLLRYISSHDFTIFAWYRIVFGIIVLVTAYTGTVAWVD 284
           AFLCVRWLLRYISSHDFTIFAWYRI+FGIIVLVTAYTG VAWV+
Sbjct: 241 AFLCVRWLLRYISSHDFTIFAWYRIIFGIIVLVTAYTGVVAWVE 284


>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 33/283 (11%)

Query: 11  IMGIVEGLTEFLPISSTGHLILTNSLLQFTGPDFSKEKADVFEIVIQAGAILAVCWEYRV 70
           ++GIV+G+TE LPISST H+ +  +LL +  P         F   +Q  A+ AV   +R 
Sbjct: 23  LLGIVQGITELLPISSTAHMRIVPALLGWHDP------GSAFSAAMQLAALAAVISYFRR 76

Query: 71  RIATVLTGMFSDRKAQ-------RLVINLIVAFLPAAILGFLFSRRIKDVLFNPV---SV 120
            ++ V  G  +  + +       RL + +I+A +P  I G   S  + +   +P+   +V
Sbjct: 77  DVSAVTGGSLAAWRRRDFNDPMFRLAVAIILATIPIGIAGLSLSH-VLNACGSPLRSLTV 135

Query: 121 AIAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGA 180
                VG  I+L +         M      +VD M   DAL VG+AQ  ALIPG SRSG+
Sbjct: 136 IGWSCVGMAILLAISE-------MVCRHRRSVDQMRLRDALIVGLAQVGALIPGVSRSGS 188

Query: 181 TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPL-----FTVGTV 235
           T+   +     R+ A  FSF L +P +  A +    KE A+L  A +PL        G +
Sbjct: 189 TLTAALFLNFRREEAARFSFLLGLPAIALAGL----KELAVLLHAHIPLEAWGVLLFGLL 244

Query: 236 AAFVSAFLCVRWLLRYISSHDFTIFAWYRIVFGIIVLVTAYTG 278
            A VSAF  +  L++++       F  YR V G  +LV    G
Sbjct: 245 VASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLLVAVAQG 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 820,707
Number of extensions: 31606
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)