BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0478.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyl...   432   e-122
gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate carboxyl...    77   8e-16

>gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate
           O-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  432 bits (1111), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/221 (95%), Positives = 216/221 (97%)

Query: 1   MNIEQARFNMIEQQIRPWNVLAQDVLDLLMVVKREEFVPAAYRSLAFFDTEIPLPGGENM 60
           MNIEQARFNMIEQQIRPWNVLAQDVLDLLMVVKREEFVPAA+RSLAFFDTEIPLPGGENM
Sbjct: 1   MNIEQARFNMIEQQIRPWNVLAQDVLDLLMVVKREEFVPAAHRSLAFFDTEIPLPGGENM 60

Query: 61  LAPKIEARILQEANVKKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAAQNLS 120
           LAPKIEARILQEANVKKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALA +NLS
Sbjct: 61  LAPKIEARILQEANVKKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAERNLS 120

Query: 121 DYGVANVDVQLGNGAQGWNGADGKPAEYDVIVISGSLPVLPDAFGKQLKIGGRLLAIVGS 180
           DYGVANVDVQLGNGAQGW GADGK AEYDVIVISGSLPVLP+AFGKQLKIGGRLLAIVGS
Sbjct: 121 DYGVANVDVQLGNGAQGWVGADGKAAEYDVIVISGSLPVLPEAFGKQLKIGGRLLAIVGS 180

Query: 181 APVMELQLITRTSEHVFETVNIVETLAKPLHAALTPSHFTF 221
            PVMELQLITRTSEH FETVN+VETLAKPLHAALTPSHFTF
Sbjct: 181 LPVMELQLITRTSEHAFETVNVVETLAKPLHAALTPSHFTF 221


>gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate
           carboxylmethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 321

 Score = 77.4 bits (189), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 25  VLDLLMVVKREEFVPAAYRSLAFFDTEIPLPGGENMLAPKIEARILQEANVKKH----EY 80
           VL  L  V R  FV     S A+ D  +P+   + +  P I AR+++     +H    + 
Sbjct: 132 VLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIEIMRQNRHGGRLDR 191

Query: 81  VLEIGAGSGYMAALLAHKARHVTTVEISPELKALAAQNLSDYGVANVDVQLGNGAQGWNG 140
           VLEIG G GY AA+L+  A  V ++E    L  LA  NL    VAN+ +  G+G  G   
Sbjct: 192 VLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRLHYGDGMLGLP- 250

Query: 141 ADGKPAEYDVIVISGSLPVLPDAFGKQLKIGGRLLAIVGSAPVMELQLITRTSEHVFETV 200
              + A +D I+++ +   +P A  +QL +GGRL+A VG    + L+LI R     +   
Sbjct: 251 ---QVAPFDGIILAAAGLEVPQALLEQLAVGGRLVAPVGERQQV-LELIERVGPRDWRRT 306

Query: 201 NIVETLAKPLH 211
            + +    PL 
Sbjct: 307 TLEQCHFVPLR 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 726,028
Number of extensions: 31720
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)