BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0477.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309823|ref|YP_003773915.1| rhodanese-related sulfurtransfe...   216   2e-58
gi|300309504|ref|YP_003773596.1| transmembrane protein [Herbaspi...    62   1e-11

>gi|300309823|ref|YP_003773915.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  216 bits (551), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 102/107 (95%), Positives = 104/107 (97%)

Query: 1   MEHISAPELAAWINDPDRPTPLLLDVREPWEHQTCHIAGVQLVPMNTIPGRFSEFDEEQP 60
           MEHISA ELAAWINDPDRPTPLLLDVREPWEHQTCHIAG QLVPMNTIPGRFSE DEEQP
Sbjct: 1   MEHISATELAAWINDPDRPTPLLLDVREPWEHQTCHIAGSQLVPMNTIPGRFSELDEEQP 60

Query: 61  VVCICHHGGRSMQVAAFLERQGFSKVINLSGGVHAWASQVDPSMPTY 107
           VVCICHHGGRSMQVAAFLERQGF+KVINLSGGVHAWASQVDP+MPTY
Sbjct: 61  VVCICHHGGRSMQVAAFLERQGFTKVINLSGGVHAWASQVDPAMPTY 107


>gi|300309504|ref|YP_003773596.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 22  LLLDVREPWEHQTCHIAGVQLVPMNTIPGRFSEFDE--EQPVVCICHHGGRSMQVAAFLE 79
           L+LDVRE  +    H+   + +P+  +P R  E D+   +PV+ +C  G ++ +  A L+
Sbjct: 48  LVLDVREAEQFAAGHLRDARNIPLKELPQRIGELDKLKGRPVIVVCQTGTQANRAEATLK 107

Query: 80  RQGFSKVINLSGGVHAWASQVDP 102
           + GFS+V  L+GG+ AW  Q  P
Sbjct: 108 KAGFSEVYGLNGGIAAWQGQGLP 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 404,622
Number of extensions: 15592
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)