BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0474.p (1048 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 2058 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1180 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1165 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1146 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 691 0.0 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 2058 bits (5331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1018/1048 (97%), Positives = 1034/1048 (98%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITVTFSPETNPDLAAVDVQNRLKRVEARLPA 120 VTSLIEQEMNGADGLQYIESQSQANGQVQIT+TFSPETNPDLAAVDVQNRLKRVEARLPA Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 ERAMRIWIDPNKLIGLNLTPGDVTAAITAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 ERAMRIWIDPNKLIGLNLTP DVTAAI AQNALVAGGTLGALPSPGTQQIAATVVVNGQL Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 TSPEQFGNIVLRANADGSTVRLRDVARVEMGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 TSPEQFGNI+LRANA+G+TVRLRDVARVE+GGQSYDTSGRLDGKPSSFIGVQLSPTANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 GTATAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 GTATAVHKKMEELAKYFP GVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 SEEGLSPPEATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 SEEGLSP +ATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGVISKMLNKAGRY 540 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQG+I MLNKAGRY Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 541 MIVYVVIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTLEVVKKIEQYYLKD 600 MIVYV+IVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGAST+RT VVK+IE+YYLKD Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 601 TAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSERDKSQSADAIAGKAFGAFSQIKDAIVF 660 AVEHAIAVLGYSFSGNGQNAALVFTPLKDWS+RDKSQSADAIAGKAFGAFSQIKDAIVF Sbjct: 601 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF 660 Query: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMAAQSKVLAGVRPEGLEDAP 720 PLNPPPIPELGNATGFTFRLQDRAGLGH ALVQARNQILGMA+QSKVLAGVRPEGLEDAP Sbjct: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 Query: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANQRLQPED 780 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPN GRQQRVIVQADA +RLQPED Sbjct: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 Query: 781 LTNLYARNSSGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 LTNLYARNSSG MVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME Sbjct: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 Query: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV Sbjct: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 Query: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIEATLE 960 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQG GLIEATLE Sbjct: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 960 Query: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF Sbjct: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 Query: 1021 VVVRKVFKGSERQRKFDAEHSPKIDSGE 1048 VVVRK+FKGSERQRKFDAEHSPKI+SGE Sbjct: 1021 VVVRKIFKGSERQRKFDAEHSPKINSGE 1048 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1026 (58%), Positives = 764/1026 (74%), Gaps = 8/1026 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWV+A+FI+L G +A++ LP+++YP++APPT+ + ATYPGAT QT++D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITVTFSPETNPDLAAVDVQNRLKRVEARLPA 120 V SLIE+E++G L Y ES + +G QI+VTF P T+P+LA VDVQN+LK +EARLP Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 V Q GV V + S+FLL + L+S DG+ D V L DYL+RN++ E++R+ GVG+ QLFG Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 ERAMRIWIDPNKLIGLNLTPGDVTAAITAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 E+AMRIW+DP KL LT D++ AI+ QNA +A G LG P+ QQIA + V GQL Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 TSPEQFGNIVLRANADGSTVRLRDVARVEMGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 SP QF IVL+A ADGS V L DVARVE+G QSY + R +GKP+ VQLSP ANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 GTATAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 TA A+ +MEEL P G+ +++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 N+RYT+IP IV P+ALLGT A + L G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 SEEGLSPPEATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 + EGL P EAT KAMG+I+GA+IGITLVL AVFIPMA GG+VG IYRQFS++M S++F Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGVISKMLNKAGRY 540 S +A +LTPALCAT+L+PV G HH+K+GFFG FNR FN + Y+ + +++ + R Sbjct: 481 SAFLALSLTPALCATLLRPVPAG-HHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 Query: 541 MIVYVVIVACVGLLYV---RLPASFLPNEDQGYIITNVQLPPGASTARTLEVVKKIEQYY 597 M+VY A GLL V LP++FLP EDQGY +T+ QLP A+T RT V + E+Y Sbjct: 540 MLVY---AALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYL 596 Query: 598 LKDTAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSERDKSQSADAIAGKAFGAFSQIKDA 657 + ++VLG+ FSG+G NAA+ FT LKDW ER S SA S + D Sbjct: 597 KGREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGV-DG 655 Query: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMAAQSKVLAGVRPEGLE 717 +V L PP I ELGN++GF RLQDRA G+AAL A Q+L +AA+S+ L+GV +GL Sbjct: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLP 715 Query: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANQRLQ 777 +QL+IDR KA ALGV FS+I+ LS A+GS YVNDFPN GR Q+VI+QA A+ R+Q Sbjct: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 Query: 778 PEDLTNLYARNSSGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMA 837 ED+ LY RN SGGMVP + V A W P QL RY G+PA++I+G AAPG ++GEAMA Sbjct: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMA 835 Query: 838 EMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVM 897 EME +LPPGF WTGQSL+E+ S QAP L ALS++ VFLVLAALYES SIPL+VM Sbjct: 836 EMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVM 895 Query: 898 LVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIEA 957 LVVPLG++GA+ V LR MPNDV+FKVGMI V+GLSAKNAILI+EFA+ L+++GMGL+EA Sbjct: 896 LVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEA 955 Query: 958 TLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVP 1017 ++A LR RPI+MTSLAF LGV+PL +ASGA + +QRAIGTGV GGM++ATVLAV VP Sbjct: 956 AIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVP 1015 Query: 1018 IFFVVV 1023 +FFV+V Sbjct: 1016 VFFVLV 1021 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/1031 (56%), Positives = 754/1031 (73%), Gaps = 4/1031 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWVLAI +MLAG +++ LP++QYP IAPP I +TA YPGA+A+TL+D+ Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITVTFSPETNPDLAAVDVQNRLKRVEARLPA 120 VT +IEQ+M G D L Y+ S S+++G V IT+TF TNPD A V VQN+L LP+ Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 V QQG+ VTKS +NFL + +S DG + L DY++ NV + I RV GVG LFG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 ERAMRIWIDPNKLIGLNLTPGDVTAAITAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 + AMRIW+DPNKL LTP DV AI AQNA V+ G LG LP+ QQI AT+ +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 TSPEQFGNIVLRANADGSTVRLRDVARVEMGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 + +QF NIVLR G+ V+LRDVAR+E+G +SY + GR +GKP++ + ++L+ ANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 GTATAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 T A+ K++ EL K+FP G+K PYDT+ FV+ISIEEVV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 N R T+IPTI VPV LLGTF L +FGF+IN LTMF MVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLSPPEATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 SEEGL P +ATRK+MGQISGAL+G+ LVL AVF+PMAFF G+ G IYRQFS+++V++M Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGVISKMLNKAGRY 540 SVL+A LTPALCAT+LKP KGH GFFGWFNR+F+ + YQG++ ML + RY Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 541 MIVYVVIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTLEVVKKIEQYYLKD 600 M Y V++A V +++LP FLP+EDQG + +QLP GA+ ART EV++++EQ++L D Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 601 --TAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSERD-KSQSADAIAGKAFGAFSQIKDA 657 AV AV G+SF+G+GQN F LK W ER S +A KA AF+ I+DA Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMAAQSKVLAGVRPEGLE 717 VF PP + ELGNATGF L+D A LGHAAL+QARNQ+LG Q K L VRP GLE Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANQRLQ 777 D P+ +L +D DKA ALGV S IN ++TA GSSYVNDF ++GR ++V++Q DA R+ Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 778 PEDLTNLYARNSSGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPG-RSTGEAM 836 P D+ Y RNS+G MVPFSAF TA W +G +L RYNG P+M+I G A PG S+GEAM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 A +E+ +AK+PPG G+EWTG SL+EK S + LY +S++ VFL LAALYES ++P +V Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIE 956 +LVVPLG+ GALLG L NDVYF+VG++ +GL+ KNAILI+EFAKDL G L+E Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 AT+EAV +R RPI+MTSLAFILGVLP+ + SGAG+ +Q A+GT V+GGM++ TVLAVF V Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1017 PIFFVVVRKVF 1027 P+FFV++ +F Sbjct: 1021 PLFFVIIMTLF 1031 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/1046 (53%), Positives = 764/1046 (73%), Gaps = 6/1046 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWV+AI IML G ++I L + QYP+IAPP + + ATY GA+A+TL+DS Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITVTFSPETNPDLAAVDVQNRLKRVEARLPA 120 VT +IEQ+M G D LQY+ + S + G +++TF+ TNPD+A + VQN+L++V ARLP Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 AV GV VTK+ ++ L+ + L+S D ++ + +GD++S + ++I RV GVG FGT Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 ERAMRIWIDPNKLIGLNLTPGDVTAAITAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 AMRIWIDP KL L P D+T+A+ AQN V+ G +GALP+ QQI AT+ +L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 TSPEQFGNIVLRANADGSTVRLRDVARVEMGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 T+P++F NI+++++ DGS V+L DVARVE+GG+SY + + +GKPSS + +QL+ ANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 GTATAVHKKMEELAKYFPAGVKY--TIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLF 358 TA AV KK+ EL YFPA +K I YDT+ FV++S+EEVVKTLIEAIVLV L+M+LF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVER 418 LQNIR T IP I VPV LLGTF L +FG+SIN LTMFGMVLAIG+LVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 IMSEEGLSPPEATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASM 478 +MSEE LSP EATRK+M +I+GAL+GI +VL AVFIPMAFFGG+ G IYRQFS+++V++M Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 VFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGVISKMLNKAG 538 SV++A TLTPALCAT+LKP GH + + FF WFNR F+ +A+ YQG ++ +L + Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGR-FFTWFNRSFDRSATRYQGGVAGLLKRGK 539 Query: 539 RYMIVYVVIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTLEVVKKIEQYYL 598 R +++Y +I + +L++RLP SFLP EDQG ++ +QLP GA+ +T VVK +++Y++ Sbjct: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 Query: 599 -KDTAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSERDKS-QSADAIAGKAFGAFSQIKD 656 K +VE +A++G GN QN A F LKDW +R + QSA + +A S+I+ Sbjct: 600 NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRG 659 Query: 657 AIVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMAAQSKVLAGVRPEGL 716 A VF +NPP + LG ++GF L+D G+GH AL+QAR+Q L +A + +LA VR GL Sbjct: 660 ARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGL 719 Query: 717 EDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANQRL 776 +D PQL++ ID KA+AL + S IN+ L+TA+G +YVNDF + GR ++V VQ D+ R+ Sbjct: 720 DDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRM 779 Query: 777 QPEDLTNLYARNSSGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAM 836 Q +DL Y RN++ MVPF+AF++++W GP L RYNG + +I G A G S+G AM Sbjct: 780 QADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAM 839 Query: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 AE+E VA+LP G GFEWTG S +E+ SGNQAP LYA+S++ VFL LAALYES S+P AV Sbjct: 840 AEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAV 899 Query: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIE 956 +L VPLGI+G +L + M NDVYF+VG++ VGLSAKNAILI+EFAK L G L E Sbjct: 900 ILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWE 959 Query: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 ATLEAV LR RPI+MTSLAF+ GVLPLA+ASGAGSAS+RAIGTGV+GGM++AT+L +F V Sbjct: 960 ATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFV 1019 Query: 1017 PIFFVVVRKVF-KGSERQRKFDAEHS 1041 P+F+ ++ + + R+ + D +H+ Sbjct: 1020 PLFYYLIGAWLDRRAARKPRQDDDHA 1045 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1061 (41%), Positives = 648/1061 (61%), Gaps = 35/1061 (3%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 + KFFIDRP+FA VL++ ++L G LA+ LP+S+YP + PP++VV A YPGA + + ++ Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITVTFSPETNPDLAAVDVQNRLKRVEARLPA 120 V S +E+++NG + + Y++SQ+ ++G + ITV F +PD A VQNR+ + RLP Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 V + GV KS + + L+S D + D L +Y NV + + R+ GVG+ LFG+ Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -ERAMRIWIDPNKLIGLNLTPGDVTAAITAQNALVAGGTLGALPSPGTQQIAATVVVNGQ 239 AMR+W+DPNK+ LT DV AI QN VA G +GA PS + +V G+ Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LTSPEQFGNIVLRANADGSTVRLRDVARVEMGGQSYDTSGRLDGKPSSFIGVQLSPTANA 299 L + +F +I+L+A+ DG+T RL DVARVE+ Y LD KP+ I + +P ANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LGTATAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFL 359 L +T V M+EL+ FP+ V Y+I YD ++FV+ SIE VV TL+EAI LV +V+ +FL Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 Query: 360 QNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 419 Q R +IIP + VPV+++GTF+ +L FG++IN L++FGMVLAIGI+VDDAIVVVENVER Sbjct: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Query: 420 MSEEGLSPPEATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMV 479 + GLSP +AT +AM ++SG +I I L L+AVF+P+AF G G Y+QF++++ S V Sbjct: 423 IG-AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481 Query: 480 FSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASG-------------- 525 S AF + L + + KGH + W R+ + G Sbjct: 482 IS---AFN-SLTLSPALAALLLKGHGDKPD----WLTRQMDRFLGGFFIRFNRFFNRASD 533 Query: 526 -YQGVISKMLNKAGRYMIVYVVIVAC-VGLLYVRLPASFLPNEDQGYIITNVQLPPGAST 583 Y ++ ++ + G M VYV+++A +G+ Y+ +P F+P +D+ Y++ QLP GAS Sbjct: 534 NYGHGVTGVIKRKGATMGVYVLLLAATLGISYI-VPGGFVPGQDKQYLVAFAQLPNGASI 592 Query: 584 ARTLEVVKKIEQYYLKDTAVEHAIAVLGYSFSG--NGQNAALVFTPLKDWSER-DKSQSA 640 R+ EV++K+ LK+ V AIA G S +G N +A +VF LK + ER K S Sbjct: 593 DRSEEVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSG 652 Query: 641 DAIAGKAFGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILG 700 +AIA F IK+A PPP+ LG GF +++DR LG+A L +A + Sbjct: 653 NAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMK 712 Query: 701 MAAQSKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQ 760 AA+ L + + PQL +++DR KA LG+P + + + + LGS YVNDF Sbjct: 713 AAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRF 772 Query: 761 GRQQRVIVQADANQRLQPEDLTNLYARNSSGGMVPFSAFVTAKWINGPVQLIRYNGYPAM 820 GR +V QADA R + ED+ L RN +G MVP S+ V K GP ++RYNGY A Sbjct: 773 GRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAA 832 Query: 821 KIAGGAAPGRSTGE-AMAEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAV 879 I GG APG S+ + A A LP G FEWT + ++ +GN ++ +S++ V Sbjct: 833 DINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLV 892 Query: 880 FLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAIL 939 FLVLAALYES ++PLAV+L+VP+ IL AL GV L N+++ ++G++ +VGLSAKNAIL Sbjct: 893 FLVLAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAIL 952 Query: 940 IIEFAKDLQAQGMGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGT 999 I+EFA++L+ QG ++A +EA LR RPI+MTS+AFI+GV+PL +SGAGS + A+G Sbjct: 953 IVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGI 1012 Query: 1000 GVMGGMITATVLAVFLVPIFFVVVRKVFKGSERQRKFDAEH 1040 V GM+ T+ +FL P+F+V++R + +R+ A H Sbjct: 1013 AVFFGMLGVTLFGLFLTPVFYVLLRTI----DRRALHSASH 1049 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,228,813 Number of extensions: 138952 Number of successful extensions: 676 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 589 Number of HSP's successfully gapped: 17 Length of query: 1048 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 953 Effective length of database: 1,170,045 Effective search space: 1115052885 Effective search space used: 1115052885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)