BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0472.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309817|ref|YP_003773909.1| UDP-glucose 4-epimerase [Herbas...   520   e-149
gi|300313479|ref|YP_003777571.1| UDP-galactose-4-epimerase [Herb...    65   1e-11

>gi|300309817|ref|YP_003773909.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/319 (78%), Positives = 280/319 (87%)

Query: 1   MHILITGASGFVGQALIARLSSDGQHHLRAAVRPSARAIPQDDNVEQVSISGLAADTDWS 60
           MHIL+TGASGFVG+AL++RL S+GQH LR A RPS+  +   + +E+  ISGL  +TDWS
Sbjct: 1   MHILVTGASGFVGRALLSRLDSEGQHLLRGAFRPSSETVMDRERIERTVISGLDPETDWS 60

Query: 61  AALHQTQAIVHCAARVHVMSETASDPLAEFRRINVEGTLALARQAQQAGVRRFVFISSIK 120
           AALH  +A+VHCAARVHVM+ETA DPLAEFRRIN+EG+LALARQAQQAGV+RF+F+SSIK
Sbjct: 61  AALHNIEAVVHCAARVHVMNETAGDPLAEFRRINLEGSLALARQAQQAGVQRFIFLSSIK 120

Query: 121 VNGEQTGPGASFHADDLPAPADPYGISKMEAEQALLELGRTGQMEVVVIRPVLVYGPGVK 180
           VNGEQT  G  F ADD PAP DPYGISKMEAEQALLELGRTG+M+VV+IRPVLVYGPGVK
Sbjct: 121 VNGEQTSLGRPFTADDKPAPTDPYGISKMEAEQALLELGRTGKMQVVIIRPVLVYGPGVK 180

Query: 181 ANFLSMMRWLDKGVPLPLGGITTNRRSLVALDNLVDLITVCLTHPAAVGQVFLVSDGEDL 240
           ANFLSMMRWLDKG+PLPLGGIT NRRSLVALDNLVDLITVCL HPAA GQVFL SDGEDL
Sbjct: 181 ANFLSMMRWLDKGMPLPLGGITHNRRSLVALDNLVDLITVCLAHPAAAGQVFLASDGEDL 240

Query: 241 STTAMLRRLAQALGKSPALLPIPACCLAWAARLLGKAGIAQRLCGSLQVDISKNRELLGW 300
           STT ML+RL +AL KSP LLP+PA  L  AARL+GK GIAQRLCGSLQVDISKNRELLGW
Sbjct: 241 STTGMLQRLGRALDKSPTLLPVPASWLTLAARLMGKKGIAQRLCGSLQVDISKNRELLGW 300

Query: 301 TPPTSVDQAFKKTVDAYRR 319
           +PP +VD AF+KTVDAYRR
Sbjct: 301 SPPITVDAAFRKTVDAYRR 319


>gi|300313479|ref|YP_003777571.1| UDP-galactose-4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 54/347 (15%)

Query: 4   LITGASGFVGQALIARL-------------SSDGQHHL---RAAVRPSARAIPQDDNVEQ 47
           L+TG +GF+G  L+  L             S+  QH+L   +A V P   A     N   
Sbjct: 20  LVTGVAGFIGSNLLETLLKLNQRVVGLDNFSTGFQHNLDEVKALVTPEQWA-----NFRF 74

Query: 48  VSISGLAADTDWSAALHQ-------TQAIVHCAARVHVMSETASDPLAEFRRINVEGTLA 100
           V       D D  AA+H         + ++H AA +  +  +  DP+    + N++G L 
Sbjct: 75  VEGDIRKLD-DCRAAMHHEALGSNIVEYVLHQAA-LGSVPRSIEDPITT-NQNNIDGFLN 131

Query: 101 LARQAQQAGVRRFVFISSIKVNGEQTGPGASFHADDLPAPADPYGISKMEAEQALLELGR 160
           +   A+ A V+RFV+ +S    G+   PG     D +  P  PY ++K   E       R
Sbjct: 132 MLVAARDARVKRFVYAASSSTYGDH--PGLPKVEDRIGKPLSPYAVTKFVNELYADVFAR 189

Query: 161 TGQMEVVVIRPVLVYG-----PGVKANFLSMMRWLD---KGVPLPLGGITTNRRSLVALD 212
           T  ++ + +R   ++G      G  A  +   +W+    KG  + + G     R    +D
Sbjct: 190 TYGLQTIGLRYFNIFGRRQNPDGAYAAVIP--KWIAAAIKGEQIYINGDGETSRDFCYVD 247

Query: 213 NLV--DLITVCLTHPAAVGQVFLVSDGEDLSTTAMLRRLAQALGKSPALLPIPACCLAWA 270
           N V  +L+  C     A  QV+ V+ G+  +   + + L   L  +      P    A  
Sbjct: 248 NAVQANLLAACTLQDEAANQVYNVAVGDRTTLKELYQFLRDNLSAT-----FPHLRDAQP 302

Query: 271 ARLLGKAGIAQRLCGSLQVDISKNRELLGWTPPTSVDQAFKKTVDAY 317
                +AG  +    SL  DI K R LLG+ P   + +  K++++ Y
Sbjct: 303 IFREFRAGDVRH---SL-ADIGKGRRLLGYEPSHRIGRGLKESMNWY 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,044,064
Number of extensions: 45226
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)