BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0468.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   853   0.0  
gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   105   8e-24

>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/455 (90%), Positives = 430/455 (94%)

Query: 5   LSASIFKAYDIRGIIDKTLDDQVAFQIGQAFGAAALAKGQKKVVIGRDGRLSGPSLSAAL 64
           LS SIFKAYDIRGII KTLD  VA++IGQAFGAAALAKGQKKVVIGRDGRLSGP L+A L
Sbjct: 4   LSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELAAEL 63

Query: 65  AKGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHG 124
           A+GLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHG
Sbjct: 64  ARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHG 123

Query: 125 ETIQALYQAIVKGEFPQGNGSYSTHDIKDAYISRMISDVKLARPLKIAVDCGNGVAGAFA 184
           ETIQALY AIVKG+FPQG G Y+THDIK AYI RM++DVKLARPLKIAVDCGNGVAGAFA
Sbjct: 124 ETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAGAFA 183

Query: 185 ADIYRALGCEVTELFCEVDGNFPNHHPDPAHPENLQDLIRCLQETDNELGLAFDGDGDRL 244
            +IYR LGCEVTELFCEVDG FPNHHPDPAHPENLQDLIRCL+ETD ELGLAFDGDGDRL
Sbjct: 184 GEIYRTLGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRETDCELGLAFDGDGDRL 243

Query: 245 GLVTKDGQIIYPDRQLMLFAEDVLTRNPGKEILYDVKCTRHLAPWITARGGQPLMWKTGH 304
           GLVTKDGQIIYPDRQLMLFAEDVLTR+PGKEILYDVKCTRHLAPWITARGG+PLMWKTGH
Sbjct: 244 GLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWKTGH 303

Query: 305 SLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQSDPSAVLNALPQ 364
           SLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQ+DPSAVLNALPQ
Sbjct: 304 SLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQADPSAVLNALPQ 363

Query: 365 SVSTPELQLKLQEGENFALIGKLQSEAKFEGAQDIITIDGLRVEYADGFGLARSSNTTPV 424
           SVSTPELQLKLQEGEN ALIGKLQ EA FEGAQ+II IDGLRVEY DGFGLARSSNTTPV
Sbjct: 364 SVSTPELQLKLQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNTTPV 423

Query: 425 VVLRFEAETPQALERIQGEFRKVILAARPDVTLPF 459
           VVLRFEAETP+AL RIQ +FR+ ILA RP+V LPF
Sbjct: 424 VVLRFEAETPEALARIQAQFRQAILAVRPEVALPF 458


>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  105 bits (262), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 184/419 (43%), Gaps = 30/419 (7%)

Query: 26  QVAFQIGQAFGAAALAKGQKKVVIGRDGRLSGPSLSAALAKGLQAVGVDVIDLGMVATPM 85
           ++ +  G+    A     +  V+IG+D R+SG  L AAL  G  A GVDV   G + TP 
Sbjct: 27  RLGYAAGKVLAKAKDGMTRPTVLIGKDTRISGYMLEAALEAGFAAAGVDVWLAGPLPTPA 86

Query: 86  VYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAG-----EAIHGETIQALYQAIVKGEFP 140
           V + T  L   +G++++ SHNP   NG K   A      +++  +   AL Q +      
Sbjct: 87  VAYLTRALRLSAGVVISASHNPYHDNGIKFFSASGNKLPDSVEADIEAALEQPMDCVPSE 146

Query: 141 QGNGSYSTHDIKDAYISRMISDVKLA---RPLKIAVDCGNGVAGAFAADIYRALGCEVTE 197
           +   +    D    YI    S    A   R +++ VDC +G A   A  ++  LG EV  
Sbjct: 147 KLGKARRLSDAPGRYIEFCKSTFPNAMNLRGMRLVVDCAHGAAYNIAPHVFHELGAEVIT 206

Query: 198 LFCEVDGNFPNHHPDPAHPENLQDLIRCLQETDNELGLAFDGDGDRLGLVTKDGQIIYPD 257
           +  + DG   N       P+    L+  ++E   +LG+A DGD DRL +V  +G+I   D
Sbjct: 207 IGNQPDGLNINEDCGATAPKT---LVASVREYRADLGIALDGDADRLIMVDGEGRIYNGD 263

Query: 258 RQLMLFAEDVLTRNPGKEILYDVKCTRHLAPWITARGGQPLMWKTGHSLVKAKLRETGAP 317
             L L  +D L   P    +  +     L       G      K G   V   L+E G  
Sbjct: 264 ELLYLMVKDRLATGPVHGAVGTLMTNMALEVAFKKMGVPFERAKVGDRYVLEVLQEKGWV 323

Query: 318 LGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQSDPSAVLNA----LPQSVSTPELQL 373
           LGGE SGH+   D+     DG+ + +++L  + R     A L +     PQS+    + +
Sbjct: 324 LGGEGSGHLLALDK-HTTGDGIVSALQVLSALKRSGKTLAELTSDISMYPQSL----VNV 378

Query: 374 KLQEGENFALIGKLQSEAKFEGAQDIITIDGLRVEYADGFGLARSSNTTPVVVLRFEAE 432
           K+  G ++     LQ+E K    +++    G R     G  L R S T P++ +  EA+
Sbjct: 379 KIPAGYDWKSNTALQAE-KAAVEEEL----GER-----GRVLLRPSGTEPLIRVMVEAQ 427


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,481,273
Number of extensions: 65656
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)