BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0459.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine 2-epime...   153   3e-38
gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine 2-epime...   122   5e-29

>gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 189/394 (47%), Gaps = 67/394 (17%)

Query: 5   KVACIFGTRPELIKMAPIIQKLSAAPE-FEVASICTGQHRELLTPLLEWFDLPVHHN--- 60
           ++ CI G RP  +K+API+   S   E  +   + TGQH          +D+ ++H    
Sbjct: 6   RILCIVGARPNFMKIAPIMAAFSQLGERVQAVLLHTGQH----------YDVAMNHQYFE 55

Query: 61  -MDVMRPGQNLNELAGR-------LMTEFGKLFAENHYDYVIGQGDTTSVVAAAWAAFHE 112
            + +  P  NL   +G        +M  F     +     V+  GD  S +A A  A  +
Sbjct: 56  ALGIPAPDINLEIGSGSHAQQTAAIMQHFEPALEQVQPAAVLVLGDINSTLACALVAVKK 115

Query: 113 KIPFLHVEAGLRTFDRNLPFPEEMNRVMVGRLASLHFAPTETSAENLRAEGVAEQDLFMI 172
            +P +HVEAGLR+ DR++P  EE+NR++  +++ L +     + +NL  EG+A + +  +
Sbjct: 116 GVPVVHVEAGLRSNDRSMP--EEINRILTDQISDLLYTTEANALQNLTREGIAAERVRFV 173

Query: 173 GNTVIDALQFTAERV----------GSDVPRSDNGRRMIFMTAHRRENFGEPLLRICSAV 222
           GN +ID L+    R           G +  R D G     +T HR  N  +P + + + +
Sbjct: 174 GNVMIDTLRHNLARAISLPQILATQGREDFRHDKG--YAVLTLHRPSNVDDPAV-LRALL 230

Query: 223 RAIVTKFSDVDVVFPVHPNPNVRNIVSSV----LGDLPSVKLIDPVPYEQLVGYLLRSHF 278
             + T  + + VVFP+HP    R ++       L D+P +  + P+ Y +++G +  +  
Sbjct: 231 ETVRTISATLPVVFPLHPR--TRGMIEKFGLAGLIDIPQILQLPPMGYLEMLGLMRDARL 288

Query: 279 ILTDSGGLQEEAPALGKPVLVLREETERPELVNLGGSLLVGSDEDRIVS----------E 328
            LTDSGG+QEE  ALG P + LR  TERP  V  G + L G+D   I++          +
Sbjct: 289 ALTDSGGIQEETTALGVPCVTLRHNTERPITVEQGTNTLAGNDPQAILAIFAEVMEHGGK 348

Query: 329 ASRLLTDPEFYQKMVLGYSPYGDGKSAERLVEAL 362
           A R+   PEF+           DG +AER+ + L
Sbjct: 349 AGRI---PEFW-----------DGHAAERIAQDL 368


>gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 177/355 (49%), Gaps = 18/355 (5%)

Query: 4   IKVACIFGTRPELIKMAPIIQKLSAAPEFEVASICTGQHRELLTPLLEWFDLPVH---HN 60
           +KV  I GTRPELIKM+ +I +L    +  +  + TGQ+ +     L + DL +    H 
Sbjct: 2   LKVMTIVGTRPELIKMSRVIAELDQHTQHIL--VHTGQNYDYELNQLFFEDLAIRKPDHF 59

Query: 61  MDVMRPGQNLNELAGRLMTEFGKLFAENHYDYVIGQGDTTSVVAAAWAAFHEKIPFLHVE 120
           ++ +  G N  +   R++ +  ++  +   D V+  GDT S +A   +A   KIP  H+E
Sbjct: 60  LEAV--GVNAAQTIARVIEKSDEVMEKEKPDAVLLYGDTNSCLAV-ISAKRRKIPVFHME 116

Query: 121 AGLRTFDRNLPFPEEMNRVMVGRLASLHFAPTETSAENLRAEGVAEQDLFMIGNTVIDAL 180
           AG R FD+ +P  EE+NR ++  L+ ++   TE +   L AEGV  + +   G+ + + L
Sbjct: 117 AGNRCFDQRVP--EELNRKVLDHLSDINLVLTEHARRYLIAEGVRPETIIKTGSHMREVL 174

Query: 181 QFTAERVGSDVPRSDNGR---RMIFMTAHRRENFGEP--LLRICSAVRAIVTKFSDVDVV 235
                ++ S    S  G    R   ++AHR EN   P  L+ +   + A+  ++  V V+
Sbjct: 175 DHYMPKIQSSDILSRMGLEQGRYFIVSAHREENVDTPENLIDMVETLNALAQQYQ-VPVI 233

Query: 236 FPVHPNPNVRNIVSSVLGDLPS-VKLIDPVPYEQLVGYLLRSHFILTDSGGLQEEAPALG 294
              HP    R + +  +G+L S ++ + P  +   V   + +  +++DSG + EE   L 
Sbjct: 234 VSTHPRTQKR-LDALNIGNLDSRIQFLKPFGFCDYVKLQMEALCVVSDSGTITEEGSLLN 292

Query: 295 KPVLVLREETERPELVNLGGSLLVGSDEDRIVSEASRLLTDPEFYQKMVLGYSPY 349
            P + +R   ERPE +++G  ++ G  +DR++   + ++   +   ++V     Y
Sbjct: 293 LPAVTIRNAHERPEGMDVGTLIMAGLKKDRVLDAVAVIIAQHQRGSRVVAAVEDY 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,126,017
Number of extensions: 46559
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)