BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0455.p (429 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 90 4e-19 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 86 5e-18 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 85 1e-17 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 84 3e-17 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 78 1e-15 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 28/242 (11%) Query: 1 MSDYAISVQGISKRYRVRQSGASSLFKRFRGKSAPDEGAWALQDISFNVGRGEAVAIIGR 60 + D A+ + ++K Y ++ RG P A+ D+S + RGE + ++G Sbjct: 11 LDDIALELCALTKVYPLK-----------RGLFQPPGQLKAVNDVSLRLYRGETLGLVGE 59 Query: 61 NGGGKSTLLEILTGTLSPSSGSVKVNG-------RVAALLELGSGFNPEYSGRDNVMLNG 113 +G GKSTL ++L G L P+SG+V +NG R A + F YS + Sbjct: 60 SGCGKSTLAKMLLGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVA 119 Query: 114 LLLGLT-REEILGRFSEIE-AFAEIGAAIDRPVKTY-------SSGMLMRLAFAVQVLAR 164 ++GL + +G +E +I + P +T+ S G R+A A ++ R Sbjct: 120 EIVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILR 179 Query: 165 PDILIVDEALGVGDFFFQQKCLDYIKRLLAN-GTTLLFVSHDMGTVRDICQRVIYLKKGE 223 PDILI DE D Q + L+ + L A G T LF+SHD+G V + RV + +G Sbjct: 180 PDILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGS 239 Query: 224 LI 225 ++ Sbjct: 240 IV 241 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 27/243 (11%) Query: 6 ISVQGISKRYRVRQSGASSLFKRFRGKSAPDEGAWALQDISFNVGRGEAVAIIGRNGGGK 65 I + +S+R+ R+ G + RG S P AL + V GE V ++G +G GK Sbjct: 9 IETRAVSRRFGERRQGWLQRQLQARGWSRPPAITHALDKVDLKVLPGEVVGLVGESGCGK 68 Query: 66 STLLEILTGTLSPSSGSVKVNGRVAALLELGSGFNPEYSGRDNVML------NGLLLGLT 119 STL + G L PS G V VNGR A L E R V + L L Sbjct: 69 STLGRVACGLLDPSDGQVLVNGRDRASL----SSREEAEARLQVQMIFQNPYASLNPRLR 124 Query: 120 REEILGRFSEIEAFAE---------------IGAAI-DRPVKTYSSGMLMRLAFAVQVLA 163 ++I+G +++ E + A+ DR +S G R+ A + Sbjct: 125 IDQIVGEAAQVNGKVEGDLDDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAV 184 Query: 164 RPDILIVDEALGVGDFFFQQKCLDYIKRLLAN-GTTLLFVSHDMGTVRDICQRVIYLKKG 222 +P +L+ DEA+ D Q + L+ L A G T LF+SHD+G V + RV+ + G Sbjct: 185 QPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLG 244 Query: 223 ELI 225 ++ Sbjct: 245 RVV 247 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 123/295 (41%), Gaps = 56/295 (18%) Query: 31 GKSAPDE----GAWALQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKVN 86 G APD G L DI+ + RG V IIG +G GK+TL + G ++P+ GS++++ Sbjct: 317 GYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLD 376 Query: 87 G----------------RVAALLE-LGSGFNPEYS-GRDNVMLNGLL---LGLTREEILG 125 G RV + + + NP +S GR +LN L GL E + Sbjct: 377 GETLSPTLEGRTREQFRRVQIVFQNADTALNPSHSIGR---ILNRPLSFYHGLKGEAMRR 433 Query: 126 RFSEIEAFAEIGAA-IDRPVKTYSSGMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQK 184 R +E+ ++ A IDR S G R+ A + A+PD+++ DE D Sbjct: 434 RTAELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAA 493 Query: 185 CLDYIKRLLAN-GTTLLFVSHDMGTVRDICQRVIYLKKGELIFDGATNDGVALYFREASA 243 L+ + L + +F+SHD+ TVR IC ++ L G ++ + Sbjct: 494 ILELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVAN---------------- 537 Query: 244 PAVETESASPRAEMMETEVHADIIRDAIWTSNTGLKDGALVAVALYDEHGCPTTG 298 PR MM H + +S ++ G L VA +H P G Sbjct: 538 --------RPREAMMAPPYHP--YSHLLLSSVPAMQQGWLEQVAGAGQHKLPPIG 582 Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 39/250 (15%) Query: 42 LQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSP----SSGSVKVNGRV------AA 91 +++++F V RGE +A+IG +G GK+T+ L G + G V++ R A Sbjct: 49 VKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQMDEKA 108 Query: 92 LLEL------------GSGFNPEYSGRDNVMLNGLLLGLTREEILGRFSEIEAFAEIGAA 139 LL + + FNP + D V+ + L G ++ + S + E+ A Sbjct: 109 LLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHG-----VMDKASAMRKAVELFRA 163 Query: 140 I---------DRPVKTYSSGMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQKCLDYIK 190 + +R S G L R+ A+ ++ P+++I+DE D Q + L K Sbjct: 164 LALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFK 223 Query: 191 RLLAN-GTTLLFVSHDMGTVRDICQRVIYLKKGELIFDGATNDGVALYFREASAPAVETE 249 ++ GTT ++VSHD+ V + R+I L+ G + G+T+ L+ S Sbjct: 224 NVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQ--VLHAPADSYTQCLLA 281 Query: 250 SASPRAEMME 259 +ASP A +++ Sbjct: 282 AASPAARVVQ 291 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 33/226 (14%) Query: 38 GAWALQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKVNGRV-------- 89 G AL DISF+V E AIIG NG GKS+++ ++ G P G + G+ Sbjct: 54 GVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSA 113 Query: 90 ------------AALLELGSGFNPEYSGRDNVMLNGLL-----LGLTREEILGRFSEIEA 132 AL + + + +GR+ M +GLL G R E + ++E Sbjct: 114 IARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQ 173 Query: 133 ---FAEIGAAIDRPVKTYSSGMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQKCLDYI 189 F EI PV G+ R+ A + A P +L++DE + + +Q +I Sbjct: 174 VIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFI 233 Query: 190 KRLLAN---GTTLLFVSHDMGTVRDICQRVIYLKKGELIFDGATND 232 L N GTT++ + HDMG V DI RV+ L G+ I DG + Sbjct: 234 --LDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEE 277 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 16/200 (8%) Query: 41 ALQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKVNGRVAALLE------ 94 ALQDI + G IIGR+G GKS+LL + P+SG V+V+ A L+ Sbjct: 57 ALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVA 116 Query: 95 -------LGSGFN--PEYSGRDNVMLNGLLLGLTREEILGRFSEIEAFAEIGAAIDRPVK 145 + FN + DN+ L + G+ R +I R E+ A + D + Sbjct: 117 LRRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSYPR 176 Query: 146 TYSSGMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQKCLDYIKRLLAN-GTTLLFVSH 204 S G R+ A + + P+IL+ DEA D Q L ++ + G T++ ++H Sbjct: 177 RLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITH 236 Query: 205 DMGTVRDICQRVIYLKKGEL 224 +M +R+I RV+ L++G + Sbjct: 237 EMSVIREIADRVLVLEQGRV 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,340,681 Number of extensions: 57814 Number of successful extensions: 464 Number of sequences better than 1.0e-08: 95 Number of HSP's gapped: 390 Number of HSP's successfully gapped: 99 Length of query: 429 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 341 Effective length of database: 1,203,190 Effective search space: 410287790 Effective search space used: 410287790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)