BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0453.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309812|ref|YP_003773904.1| bis(5'-nucleosyl)-tetraphosphat...   462   e-131

>gi|300309812|ref|YP_003773904.1| bis(5'-nucleosyl)-tetraphosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  462 bits (1188), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/275 (82%), Positives = 245/275 (89%), Gaps = 2/275 (0%)

Query: 4   KQPNYYVLGDVQGCDGSLQALLAQLFNEPKNISHLIFAGDLINRGPQSLQTLRTVMQMGE 63
           ++ ++YV+GD+QGC      L  QL       + LIFAGDLINRGPQSLQTLRTVMQMG+
Sbjct: 2   QETHHYVIGDLQGCLTPFLDLQRQLPLSAD--AQLIFAGDLINRGPQSLQTLRTVMQMGQ 59

Query: 64  QAQAVLGNHDLHLLAVACGIRPAHRDDTLDDILNAPDREELIHWLRHRPLAIHEQGHLIV 123
           +AQAVLGNHDLHLLAVACGIRPAHRDDTL +IL APDREELIHWLRHRPLAIH Q HLIV
Sbjct: 60  RAQAVLGNHDLHLLAVACGIRPAHRDDTLAEILQAPDREELIHWLRHRPLAIHAQDHLIV 119

Query: 124 HAGVLPQWDLHQALALAAEVETMLQSEQWVDFLRHMYGNQPARWSDDLSGYERLRCIINA 183
           HAGVLPQWDL QALALA EVETML+S+QW+ FLRHMYGNQP RWSDDL GY+RLRCIINA
Sbjct: 120 HAGVLPQWDLQQALALAGEVETMLRSDQWIAFLRHMYGNQPDRWSDDLVGYDRLRCIINA 179

Query: 184 FTRLRFCQADGTMDFAVKEGAAAAPEGLLPWFEVPGRRTAEVTVVFGHWSTLGLVMRPNL 243
           FTR+RFCQADGTMDFAVKEGAAAAP GL PWF+VPGRRT EVTVVFGHWSTLGLVMRPNL
Sbjct: 180 FTRVRFCQADGTMDFAVKEGAAAAPAGLTPWFDVPGRRTEEVTVVFGHWSTLGLVMRPNL 239

Query: 244 IALDTGCVWGGKLSAVRLEDRALFQVQCPQARQPS 278
           IALDTGCVWGG+LSAVRLEDRALFQVQCPQAR+P 
Sbjct: 240 IALDTGCVWGGQLSAVRLEDRALFQVQCPQARRPG 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 944,073
Number of extensions: 40575
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)