BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0450.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...   647   0.0  
gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase ...    77   2e-15

>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/319 (99%), Positives = 319/319 (100%)

Query: 1   MLNPQLNKNGELQHLLTIEGLPRAILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFF 60
           MLNPQLNKNGELQHLLTIEGLPR+ILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFF
Sbjct: 1   MLNPQLNKNGELQHLLTIEGLPRSILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFF 60

Query: 61  ENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSG 120
           ENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSG
Sbjct: 61  ENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSG 120

Query: 121 APFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH 180
           APFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH
Sbjct: 121 APFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH 180

Query: 181 SRVARSDIHALTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVDVIIMLRLQN 240
           SRVARSDIHALTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVDVIIMLRLQN
Sbjct: 181 SRVARSDIHALTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVDVIIMLRLQN 240

Query: 241 ERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEIDSAVADGAQAVILP 300
           ERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEIDSAVADGAQAVILP
Sbjct: 241 ERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEIDSAVADGAQAVILP 300

Query: 301 QVTFGIAVRMAVMSIVAGN 319
           QVTFGIAVRMAVMSIVAGN
Sbjct: 301 QVTFGIAVRMAVMSIVAGN 319


>gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 22/266 (8%)

Query: 58  LFFENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHA 117
           +F +NSTRTR +FE    ++    I LN + S   +GE + D    ++ M  D+ ++R  
Sbjct: 48  VFEKNSTRTRLSFEAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRM-CDVIMIRTY 106

Query: 118 QSGAPFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGD 177
                   AKH      S V V+N G     HP Q L D++T   +        VA VGD
Sbjct: 107 GQEIIERFAKH------SRVPVIN-GLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGD 159

Query: 178 ---ILHSRVARSDIHAL-TTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVDVI 233
              +L+S +  +++      +  P+   I P  + P          F +  +  +D D++
Sbjct: 160 ANNMLYSWLQAAEVFGFHVNVSTPKGYDIDPAQVSPGN---KNYTFFADPADACQDADLV 216

Query: 234 ---IMLRLQNERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEIDSAV 290
              +   +  E  + A L +    F  + +   ++A AK DA+ MH  P +RG E+ + V
Sbjct: 217 TTDVWTSMGFEAENNARLKA----FDGWIVDQAKMARAKKDALFMHCLPAHRGEEVAAEV 272

Query: 291 ADGAQAVILPQVTFGIAVRMAVMSIV 316
            DG Q+V+  +    + V+ A++  +
Sbjct: 273 IDGPQSVVWEEAENRLHVQKALLEYL 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 967,854
Number of extensions: 40234
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)