BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0444.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 509 e-146 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 194 5e-51 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 181 6e-47 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 176 2e-45 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 172 3e-44 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 509 bits (1312), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/260 (94%), Positives = 252/260 (96%) Query: 1 VLSAQRVEKTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIR 60 VLSAQRVEKTYRNGT ALDEV+LDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIR Sbjct: 19 VLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIR 78 Query: 61 WWGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLV 120 WWGGNLATVGTPERTLAMVFQEATLMPWATVEQN RLPL+LRHVPRAQADARVA +LK V Sbjct: 79 WWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRV 138 Query: 121 GLEKFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWS 180 GLE FH VLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWS Sbjct: 139 GLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWS 198 Query: 181 KQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIEVDGPRDEAFRISAPFMQYCK 240 +QDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAI+ GPRDEAFR+SAPFMQYCK Sbjct: 199 RQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGPRDEAFRMSAPFMQYCK 258 Query: 241 TLSDYLTLANQQGDGHEAQH 260 TLSDYLTLANQQGDGHEAQH Sbjct: 259 TLSDYLTLANQQGDGHEAQH 278 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 194 bits (494), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 107/230 (46%), Positives = 139/230 (60%), Gaps = 6/230 (2%) Query: 2 LSAQRVEKTYRNGTR---ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGH 58 + Q V K ++ R AL ++ LDI G+FV LLGPSGCGKSTLL AG PS G Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 59 IRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALK 118 I ++ G P+R MVFQE L PW TVEQN LE++ P+A+ RV + L Sbjct: 70 ILTDDKVVSEPG-PDR--GMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLD 126 Query: 119 LVGLEKFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDI 178 +GL F P++LSGGM+ R +IAR LA ++LMDEPFGALD TR L +L I Sbjct: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 Query: 179 WSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIEVDGPRDEA 228 W + T+VFVTHSI EA++L+ R++VM RPG V D+ + + RD A Sbjct: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPA 236 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 181 bits (459), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 17 ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTL 76 ALD V LDI G FV LG SGCGKSTLL AG S G I G V P Sbjct: 21 ALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDG---QPVSGPGAER 77 Query: 77 AMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVGLEKFHKVLPRELSGG 136 +VFQ+ +L+PW +V+ N L L+ V ++ + R E L+LVGL+ F + P ELSGG Sbjct: 78 GVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGG 137 Query: 137 MQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEA 196 M+ R +ARALA +P +LLMDEPFGALD TR ++ L +W++ V F+THSI EA Sbjct: 138 MRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEA 197 Query: 197 VFLSSRVIVMAARPGRVIA 215 +FL + VIVM+ RPGR++A Sbjct: 198 LFLGTEVIVMSPRPGRIVA 216 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 176 bits (446), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 10/205 (4%) Query: 17 ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTL 76 A++++ L GEF++++GPSGCGKST +K+ GL++P+ G + G TV P + + Sbjct: 22 AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDG---QTVTGPLKFV 78 Query: 77 AMVFQEATLMPWATVEQNARLPLELRHVPR-------AQADARVAEALKLVGLEKFHKVL 129 M FQ TL+PW T N LPLE+ R A+ R LK VGL+ + Sbjct: 79 GMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTERALSLLKTVGLDGYADKF 138 Query: 130 PRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFV 189 P +LSGGMQ RASI RAL P +LL+DEPFGALD FTR +L LRD+W+++ V+ V Sbjct: 139 PWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILV 198 Query: 190 THSIYEAVFLSSRVIVMAARPGRVI 214 TH + EA FL+ + VM+ RPGR++ Sbjct: 199 THDLREAAFLADTIYVMSKRPGRIV 223 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 172 bits (436), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 4/215 (1%) Query: 2 LSAQRVEKTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRW 61 LS V K + + ++E +I GE V+L+GPSGCGKSTLL M AGLE+PS G + Sbjct: 3 LSFNNVAKHFGD-LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSV-- 59 Query: 62 WGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVG 121 G+ T+ P ++FQE L PW T++QN L LE + V + +A + L+ V Sbjct: 60 -AGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVK 118 Query: 122 LEKFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSK 181 L+ F P ++SGGM+ RA++ARA + P LL+DEPFGALD TR L LRD+ + Sbjct: 119 LKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQ 178 Query: 182 QDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIAD 216 Q TVV VTH + EA+FL+ R+ V + RP +V+ + Sbjct: 179 QGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKE 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 801,962 Number of extensions: 32945 Number of successful extensions: 457 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 132 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)