BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0443.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase [H...   701   0.0  
gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygena...    81   1e-16

>gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/343 (95%), Positives = 339/343 (98%)

Query: 1   MLVTQQKVLRKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARL 60
           MLVTQQKVLR+FWYALMP+ QL+ GPQPFTLLGEKLVVWLKEDG+PAALQDRCCHRTARL
Sbjct: 1   MLVTQQKVLRRFWYALMPIAQLRQGPQPFTLLGEKLVVWLKEDGAPAALQDRCCHRTARL 60

Query: 61  SKGFVENGNIVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWVALEE 120
           SKGFVENGNIVCGYHGWTFNGEGACVRVPQ+ DGSVP+GACVKSYFCKERYGYVWVALEE
Sbjct: 61  SKGFVENGNIVCGYHGWTFNGEGACVRVPQNADGSVPAGACVKSYFCKERYGYVWVALEE 120

Query: 121 PLRDIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE 180
           PLRDIPEFPE+GAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE
Sbjct: 121 PLRDIPEFPEEGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE 180

Query: 181 KYEIEETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG 240
           KYEI ETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG
Sbjct: 181 KYEIAETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG 240

Query: 241 RHHIIYNCATPIDDGAIMLSQWLYRNDTEEQCSEAELIAWDAPILVEDREILEATDPDAC 300
           RHHIIYNCATPIDDG+IMLSQWLYRNDTEE+CSEAELIAWDAPILVEDREILEATDPDAC
Sbjct: 241 RHHIIYNCATPIDDGSIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDAC 300

Query: 301 IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRIHPAA 343
           IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFR+HPAA
Sbjct: 301 IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRLHPAA 343


>gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygenase
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 24/175 (13%)

Query: 10  RKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARLSKGFVENGN 69
           +  WY      ++   P    + GEK+V +    G  AA++D C HR A LS GFV  G 
Sbjct: 4   KNAWYVACTPDEIDSKPLGRQICGEKIVFYRGAGGKVAAVEDFCPHRGAPLSLGFVREGQ 63

Query: 70  IVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWV-----ALEEPLR- 123
           +VCGYHG     +G  + +P       P   C++SY  +ERYG++WV        +P + 
Sbjct: 64  LVCGYHGLEMGCDGKAISMPGQRVRGFP---CIRSYPVEERYGFIWVWPGDKEQADPAQI 120

Query: 124 ------DIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFG 172
                 D PE+   G  G   I   Y         M++N  D +H +YVH ++ G
Sbjct: 121 HHLEWADNPEWAYGG--GLYHINCDYR-------LMIDNLMDLTHETYVHASSIG 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,191,143
Number of extensions: 50749
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)