BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0438.p (565 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 965 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 436 e-123 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 430 e-121 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 415 e-117 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 399 e-112 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/565 (89%), Positives = 535/565 (94%), Gaps = 2/565 (0%) Query: 1 MKSAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLET 60 MKS MK+GTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRF HVVEVKNPESALVK+MLET Sbjct: 1 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALP 120 VGERSISLRNLMLPAAPEDVDIEAQYIEAQ+LKY+M+AQKLQQLF+ES+DTS+EEKAALP Sbjct: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP 120 Query: 121 KIQARAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLE 180 KI A+A+ AEKLI+EAVEFGKRREAYELAQFLKEQYLPVQK+WQVELKALAALED+LN E Sbjct: 121 KIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKE 180 Query: 181 AAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGD 240 AAE+SA AY RAR+LMLLISAIGVVTAVLAA +TR +LRKLGGEPDYAVQIAGQIAEGD Sbjct: 181 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD 240 Query: 241 LAVVIDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQ 300 LAVVIDTRAGD+DSLMAAMRVMRDKLAAIV+EVR+GS+TITTASSEIARGNLDLS RTEQ Sbjct: 241 LAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQ 300 Query: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINAS 360 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVV TM+SINAS Sbjct: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINAS 360 Query: 361 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 420 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI Sbjct: 361 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 420 Query: 421 KVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAI 480 KVLIGDSVGKVENGSKLVEQAGSTM +IVTSIRRVTDVMTEI HANREQSSGIEQVNEAI Sbjct: 421 KVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAI 480 Query: 481 IQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSSTSASYAQPAS 540 IQIDDMTQQNAALVEQAAAAAR LQEQAAGLQQLVSVFR+DAAQA T+A PA+ Sbjct: 481 IQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAH--GHTAAPAHAPAA 538 Query: 541 AERVVDVTPGAPELPGANAALAVQG 565 ERV+DVTPGAPELP LAVQG Sbjct: 539 VERVIDVTPGAPELPAGGNVLAVQG 563 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust. Identities = 271/550 (49%), Positives = 368/550 (66%), Gaps = 12/550 (2%) Query: 1 MKSAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLET 60 M MK+GT+L LGF +V+L +LV+G + ++ + K V+ V++ + A + E Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALP 120 + + I+ RN + + D E ++ Q Y + + L LF A E EK Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLF---AGNKEFEKVRSG 117 Query: 121 KIQ-ARAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNL 179 +Q A +L E+ R E Y FL + P+++ ++ + A + N Sbjct: 118 MLQMAEELKRPRLYRES----GRSEEYR--DFLVNECSPLRRQIVSDIGTVLAQVEAENN 171 Query: 180 EAAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEG 239 A +++ A L + +++ + VV ++L A+L+TR +L++LGGEP YA QIA QIA+G Sbjct: 172 RAQDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADG 231 Query: 240 DLAVVIDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTE 299 DL + T+ GDN SL+ A++ MRD L +IV++VR+G+ TI ASSEIA GNLDLS+RTE Sbjct: 232 DLTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTE 291 Query: 300 QQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINA 359 QQA +LEETAS+ME+L +TVKQNA+NA QA+ LA++AS+VA QGG +V+QVV TM+ INA Sbjct: 292 QQASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINA 351 Query: 360 SSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 419 SS+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKE Sbjct: 352 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKE 411 Query: 420 IKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEA 479 I LI DSV ++E GS LVEQAG TM +V S++RVTDV+ EI+ A++EQS GI QVN A Sbjct: 412 ITELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTA 471 Query: 480 IIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSSTSASYAQPA 539 I +D+ TQQN+ALVE+AAAAA ++EQA L LV+ FR+DA QAR + + AS PA Sbjct: 472 ITHMDEATQQNSALVEEAAAAANSMKEQAGALSGLVATFRLDAQQARQSGYSQASA--PA 529 Query: 540 SAERVVDVTP 549 A V P Sbjct: 530 HAHHVTGNLP 539 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/551 (45%), Positives = 355/551 (64%), Gaps = 10/551 (1%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVGER 64 +KV TRL LGF +++ L+ ++ G++ M +V + +V N E LV + + +R Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALPKIQA 124 ++++RN+ L D+ +E+Q + Q Y + L ++F+ A T+E E+ L +I+ Sbjct: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 Query: 125 RAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLEAAES 184 A L+++AV+ G +A E + L Q P Q+AW L LA ED+LN EAA S Sbjct: 124 DEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 Query: 185 SAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGDLAVV 244 + Y R++ + + ++ V A+ LI R ILR+LG EP A +A IA GDL Sbjct: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTAT 243 Query: 245 IDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQQAGA 304 + R GD+ SLMA++ MR +L I ++ ++TI+ AS +IA+GN DLS RTE+QA + Sbjct: 244 VRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINASSQKV 364 LEETA+SME+L +TV+QN ++A +A L+ A++ A G +VV TM+ I ASS K+ Sbjct: 304 LEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 Query: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 +DI+SVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI Sbjct: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELI 423 Query: 425 GDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAIIQID 484 G+S+ V GS+LV AG M +IV S++R ++M I A +EQ SGIEQ+N A++Q+D Sbjct: 424 GESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMD 483 Query: 485 DMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSSTSASYAQPASAERV 544 +TQQNAALVE+A+AAA+ L +QA+GL ++VSVF+I R S +A Q A Sbjct: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI-----RQDRSLAAPLEQAA----- 533 Query: 545 VDVTPGAPELP 555 + TPG P +P Sbjct: 534 LTRTPGMPGMP 544 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust. Identities = 251/523 (47%), Positives = 354/523 (67%), Gaps = 2/523 (0%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVGER 64 +KV TRL LGFA VV+LLV+++ G++ M V+G +V N + L M +V R Sbjct: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSVRIR 62 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALPKIQA 124 ++++RN+ L P + E + I+ Q Y+ + +KL ++F + DT+ E I Sbjct: 63 ALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQP-DTTRREHELFDLIAQ 121 Query: 125 RAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLEAAES 184 AA E L+++AV ++ ++ EL L ++ PVQ W L L ED+LN +A+ + Sbjct: 122 NAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAA 181 Query: 185 SAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGDLAVV 244 + Y + A V+ AV AA LI R +L +LGGEP A ++A QIA+G+LAV Sbjct: 182 ADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVS 241 Query: 245 IDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQQAGA 304 I GD SLMA++ MR +L IV ++ +++I+TA+S+IA GNLDLS RTE+QA + Sbjct: 242 IPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAAS 301 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINASSQKV 364 LEETASSME++ STV+QN +NA Q + LA +AS A +GG +V +VV TM+ I+ S+ K+ Sbjct: 302 LEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKI 361 Query: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 +I++ ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAS+AKEI+ LI Sbjct: 362 TEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLI 421 Query: 425 GDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAIIQID 484 SV VE G KLV++AG TM E+V SI++V D+M+EIT A+ EQSSGI Q+N AI Q+D Sbjct: 422 ESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMD 481 Query: 485 DMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARV 527 ++TQQNAALVE++A+AA+ + +QA L+ V+VFRI+ Q V Sbjct: 482 EVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQPAV 524 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/518 (48%), Positives = 345/518 (66%), Gaps = 12/518 (2%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVGER 64 MK+GT+L LGFA ++ L +++ G +F+++++ G K +V+ + E + + Sbjct: 15 MKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAREALDQT 74 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALPKIQA 124 ++ RN + D E ++ Q Y + + ++ F + L Sbjct: 75 GLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGLLQ---- 130 Query: 125 RAATAEKLISEAV--EFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLEAA 182 AE+L + E GK E FL + P+++ +++ + D N++A Sbjct: 131 ---MAEELKRPRIYRESGKMEE---FRDFLVNECSPLRRQIVLDINKVIEEADADNIKAH 184 Query: 183 ESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGDLA 242 +++ A L+ +++ I V + L A +ITR +L++LGGEP YA IA QIA GDL Sbjct: 185 QTTVDMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLT 244 Query: 243 VVIDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQQA 302 +D + GD SL+ A++ MRD LAAIV +VR G+ I AS+EIA GN+DLS+RTEQQA Sbjct: 245 ADVDAKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQA 304 Query: 303 GALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINASSQ 362 GALEETAS+ME+L STVKQNA+NA QA+ LA++ASDVA QGG +V QVV+TME INASS+ Sbjct: 305 GALEETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSR 364 Query: 363 KVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKV 422 K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI Sbjct: 365 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITD 424 Query: 423 LIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAIIQ 482 LI DSVG++E GS LV QAG+TM +VTS++RVTDV+ EI+HA++EQS GI QVN AI Sbjct: 425 LINDSVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITH 484 Query: 483 IDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRI 520 +D+ TQQN+ALVE+AAAAA ++ QA L LVS F++ Sbjct: 485 MDEATQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKL 522 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,237,351 Number of extensions: 40548 Number of successful extensions: 554 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 70 Length of query: 565 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 475 Effective length of database: 1,193,720 Effective search space: 567017000 Effective search space used: 567017000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)