BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0436.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309794|ref|YP_003773886.1| Rossmann fold nucleotide-bindin...   440   e-125

>gi|300309794|ref|YP_003773886.1| Rossmann fold nucleotide-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score =  440 bits (1131), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/214 (99%), Positives = 214/214 (100%)

Query: 1   MAEFIESTERLSELRPAVSIFGSARIKPDNPHYQLCVEIARLISDAGYAVISGGGPGIME 60
           MAEFIESTERLSELRPAVSIFGSARI+PDNPHYQLCVEIARLISDAGYAVISGGGPGIME
Sbjct: 35  MAEFIESTERLSELRPAVSIFGSARIRPDNPHYQLCVEIARLISDAGYAVISGGGPGIME 94

Query: 61  AANKGAYEGASPSVGLNIELPHEQHGNAWQDISLSFRHFFARKVAFVKYADAYVVLPGGF 120
           AANKGAYEGASPSVGLNIELPHEQHGNAWQDISLSFRHFFARKVAFVKYADAYVVLPGGF
Sbjct: 95  AANKGAYEGASPSVGLNIELPHEQHGNAWQDISLSFRHFFARKVAFVKYADAYVVLPGGF 154

Query: 121 GTLDELTEALTLMQTGKSRMMPVILVGSQFWAGLVDWIKTRLVDDGMISPKDVNLLQVID 180
           GTLDELTEALTLMQTGKSRMMPVILVGSQFWAGLVDWIKTRLVDDGMISPKDVNLLQVID
Sbjct: 155 GTLDELTEALTLMQTGKSRMMPVILVGSQFWAGLVDWIKTRLVDDGMISPKDVNLLQVID 214

Query: 181 EPAEVLAAIQKFHAEKAKPADTQQEAERQSGMYL 214
           EPAEVLAAIQKFHAEKAKPA+TQQEAERQSGMYL
Sbjct: 215 EPAEVLAAIQKFHAEKAKPAETQQEAERQSGMYL 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 723,760
Number of extensions: 31858
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)