BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0435.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452...   233   1e-62
gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136...    77   1e-15
gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577...    69   3e-13

>gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  233 bits (593), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/230 (50%), Positives = 154/230 (66%), Gaps = 3/230 (1%)

Query: 1   MPVSRAYFTQLLLGTLYAV-LFLSLVPLVLAAAMLVLSYAWLSEWSMAHWKAALHEHRAA 59
           MPV++AY TQL L TLY + LF S++  VL    LV+  +   +  +  W          
Sbjct: 1   MPVAKAYLTQLFLSTLYMLALFGSIMAAVLTLP-LVVPASLEQQLGVQPWMDQAASEPGE 59

Query: 60  IYWVTAAIMGGALGLFYHALDRIIALAKPSWQAAYQTMTVLYMLLMSYGLAILLVSALTP 119
           +Y +  AI+   LGLFY +++R++A AK   +  YQT T+LYML MSYGLAI + + L P
Sbjct: 60  LYCILGAILACVLGLFYRSMNRVVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLAP 119

Query: 120 SYHQCDMYTRQLNGGERQYRGQQFHIELCGAGS-DASRHEQIRLRIYDEHGRWRAVRYFT 178
            Y  C+ YT++LNGG RQYRG  F +ELCGAG  ++ R +++RLRIYDE G  RAVRYF 
Sbjct: 120 QYRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRLRIYDESGDLRAVRYFG 179

Query: 179 IRWASDFPLMLEYSADHFSYFDAGEQDDFARVMPMPPPLGDWLITHIPLL 228
           ++W  DFP +LEYS DH SYFDAG+++DFARV+ MPP L DW+ T IPLL
Sbjct: 180 VQWGRDFPALLEYSRDHLSYFDAGDEEDFARVIAMPPTLADWVQTRIPLL 229


>gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 82  IIALAKPSWQAAYQTMTVLYM---LLMSYGLAILLVSALTPSYHQCDMYTR--QLNGGER 136
           +   A+P      QT TV +    LL+S  L  L++    P Y +CD Y R   L+GG +
Sbjct: 44  VAVAAQPQPWRDMQTRTVKFFGLALLVSLALG-LIIHFTRPHYGRCDFYNRPDTLDGGVK 102

Query: 137 QYRGQQFHIELCGAGSDA--SRHEQIRLRIYDEHGRWRAVRYFTIRW--ASDFPLMLEYS 192
              G  +  ++CG G +      ++I L+++++ G   A RYF++ W     F   L Y 
Sbjct: 103 LLNGTSYRFQMCGTGGNDQDGTDDKIELKVFNDQGTLLARRYFSVNWYAGKGFHQPLTYE 162

Query: 193 ADHFSYFDAGEQDDFARVMPMPPPLGDWLITHIPLL 228
            D   Y D  E  ++ + + +PP   DW+   +PL 
Sbjct: 163 NDSVRYIDVTENSEYEKRLSIPPTKWDWIRARLPLF 198


>gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 119 PSYHQCDMYTRQLNGGERQYRGQQFHIELCGAGSDASRHEQIRLRIYDEHGRWRAVRYFT 178
           P+Y +C+ +T+ LNGGE+ + G  + I+LCGA  D     +IRL+++   G   A RYF+
Sbjct: 16  PTYGRCESFTKDLNGGEKIFHGAMYDIKLCGA--DIKNGTKIRLQVFGRSGDLLAERYFS 73

Query: 179 IRWASDFPLMLEYSADHFSYFDAGEQDDFARVMPMPPPLGDWLITHIPLL 228
               S     L    D   YFD+  +     +  +PP   DW+   +PL 
Sbjct: 74  YYVNSATERDLTEGVDSIIYFDSARESPMQSI-SIPPTKWDWIRARLPLF 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,133
Number of extensions: 29104
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)