BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0433.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309791|ref|YP_003773883.1| homoserine kinase [Herbaspirill...   605   e-174

>gi|300309791|ref|YP_003773883.1| homoserine kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 318

 Score =  605 bits (1560), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/317 (91%), Positives = 304/317 (95%)

Query: 14  MAVFTPVSLEQLSDWIEQFPLGRATSIKGISSGIENSNFFIDTERGEYVLTLFEKLHIEQ 73
           MAVFTPVSLEQLSDW++ FPLG ATSIKGISSGIENSNFFI TERGEYVLTLFEKLHIEQ
Sbjct: 1   MAVFTPVSLEQLSDWLKHFPLGTATSIKGISSGIENSNFFIGTERGEYVLTLFEKLHIEQ 60

Query: 74  LPFYLELMRHLAQRGIPVPEPVANDKGAIVNLLNDKPAAIVSKLEGQSQLDPQPVHCAAL 133
           LPFYLELMRHLA+RGIPVP PVANDKGAIV+LLNDKPAAIVSKLEGQSQLDPQPVHCAAL
Sbjct: 61  LPFYLELMRHLAERGIPVPAPVANDKGAIVSLLNDKPAAIVSKLEGQSQLDPQPVHCAAL 120

Query: 134 GDMLARMHLAGKDFKILQPNLRGLAWWLETTPAVLPFLPPELGRLLADEVQYQKDFAATS 193
           GDMLARMHLA KDFKILQPNLRGLAWWLETTP VLPFLP ELGRLLADEVQYQKDFAAT+
Sbjct: 121 GDMLARMHLAAKDFKILQPNLRGLAWWLETTPTVLPFLPAELGRLLADEVQYQKDFAATA 180

Query: 194 DYRALPRGPVHADLFRNNAMFVGEQLSGIFDFYFAGVDTWLFDLAVTVNDWCVELDTGVL 253
           DYRALPRGPVHADLFRNNAMFVGE+LSGIFDFYFAG DTWLFDLAVTVNDWCV+LDTGVL
Sbjct: 181 DYRALPRGPVHADLFRNNAMFVGERLSGIFDFYFAGCDTWLFDLAVTVNDWCVDLDTGVL 240

Query: 254 DTSRSQAMLEAYRAVRPFSDAERVAWQPMLRAAALRFWLSRLYDFYLPREAEMLTPHDPT 313
           D +R++AML AYRAVRPFS+AER+AWQPMLRAAALRFWLSRLYDFY+PR AEMLTPHDPT
Sbjct: 241 DLARTEAMLAAYRAVRPFSEAERIAWQPMLRAAALRFWLSRLYDFYMPRAAEMLTPHDPT 300

Query: 314 HFERILRLRINQAPPAL 330
           HFERILRLRI + PPAL
Sbjct: 301 HFERILRLRIAETPPAL 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,088,142
Number of extensions: 47408
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)