BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0431.p (518 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 965 0.0 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 572 e-164 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 369 e-103 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 332 6e-92 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 328 7e-91 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/518 (93%), Positives = 499/518 (96%) Query: 1 MNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEEEELLGAPQNLIRHPDMP 60 MNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEE ELLGAPQNLIRHPDMP Sbjct: 3 MNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPDMP 62 Query: 61 AEAFGDMWATIKAGLPWTGLVKNRSKNGDHYWVRANVTPIRESGQVVGYMSVRTKPERAA 120 AEAF DMWATIK G PWTGLVKNRSKNGDHYWVRANVTPIRE+GQ+VGYMSVRTKPER A Sbjct: 63 AEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPERDA 122 Query: 121 VEAAEKLYASIRRGQAKGIALHRGEVVRTGVAGWLGKLSRMQLNTRLNLSMGVMLAIQIA 180 V AEKLYASIRRGQAKGIALHRGEVVRTG+AGWLGKLSRMQLN+RLNLSMG+MLAIQ+A Sbjct: 123 VAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQLA 182 Query: 181 VVVAGMVTLHQWWISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIE 240 VVVAGM LHQWWISALAA +AL+SIVQWIALR ALIKPLHQALDITHAITGGDLSVRIE Sbjct: 183 VVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVRIE 242 Query: 241 SGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANL 300 + RHDELGRLL SLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANL Sbjct: 243 TTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANL 302 Query: 301 EETASSMHQLASTVRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIV 360 EETASSMH+LASTVRQNADHAVQANDLAGTAS+IAMRGGDAVASTGTTMNEIS+SS+KIV Sbjct: 303 EETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHKIV 362 Query: 361 DIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLID 420 DIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK LID Sbjct: 363 DIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELID 422 Query: 421 DSVAKVEVGNRQVEQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDA 480 SV KV++GNRQVEQAT TMRDIV SVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDA Sbjct: 423 ASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDA 482 Query: 481 STQQNASLVEEAAGAAGSLQEQTVRLLQAISVFKFNRR 518 STQQNASLVEEAA AAGSLQEQTVRLLQAISVFKFNRR Sbjct: 483 STQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 572 bits (1474), Expect = e-164, Method: Compositional matrix adjust. Identities = 305/523 (58%), Positives = 392/523 (74%), Gaps = 11/523 (2%) Query: 2 NMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEEEELLGAPQNLIRHPDMPA 61 N+P+T ERLL DGK+IVSKTDL+GNI YVNPYFIEISGFEEEEL+GAPQN++RHP+MP Sbjct: 4 NLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPEMPR 63 Query: 62 EAFGDMWATIKAGLPWTGLVKNRSKNGDHYWVRANVTPIRESGQVVGYMSVRTKPERAAV 121 EAF DMWAT+K GLPW GLVKNR KNGD+YWV+ANVTP+RE+G+ VGYMSVRT+P R V Sbjct: 64 EAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQV 123 Query: 122 EAAEKLYASIRRGQAKGIALHRGEVVRTGVAGWLGKLSRMQLNTRLNLSMGVMLAIQI-- 179 +AAE Y GQA+G+ +HRG VVRTG+ GWL L + + RL +MGV+ + I Sbjct: 124 QAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMFILG 183 Query: 180 ------AVVVAGMVTLHQWWISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGG 233 AV+ AG W +A AL+ + W L A+++ PL +A+ H + GG Sbjct: 184 GAVAGNAVMSAGGSPFAVWLGTA---AGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 234 DLSVRIESGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRT 293 DL I++ ++G LL +L+Q+NVNL AIIGDVR NVE++T++T EIA+GN+DLS RT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 294 EAQAANLEETASSMHQLASTVRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEIS 353 EAQA+ LEETASS+ + A+TVRQNAD A A+ A +AS+IA RGG +V G TM EI Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 354 QSSNKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 413 +S+KIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 414 EIKLLIDDSVAKVEVGNRQVEQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHE 473 +IK LIDDS AKVE GN+ V + + M ++ +V+ ++ M EI A+ +QS GI Q+++ Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 474 AITQMDASTQQNASLVEEAAGAAGSLQEQTVRLLQAISVFKFN 516 A+ +D +TQQNA+LVE+AA AA +L++Q V+L QA+SVFK + Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKIS 523 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 369 bits (946), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/503 (43%), Positives = 309/503 (61%), Gaps = 15/503 (2%) Query: 19 VSKTDLKGNITYVNPYFIEISGFEEEELLGAPQNLIRHPDMPAEAFGDMWATIKAGLPWT 78 +S TD +TY N F+E+SGF E+L+G P N++RHPDMP EAF DMWAT++ G WT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 79 GLVKNRSKNGDHYWVRANVTPIRESGQVVGYMSVRTKPERAAVEAAEKLYASIRRGQAKG 138 +VKNR +G HYWVRANVTPIR G + G++SVRT+P + AA LY R G+A+G Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 139 IALHRGEVVRTGVAGWLGKLSRMQLNTRLNLSMGVMLAIQIAVVVAGMVTLHQWWISALA 198 + G VVR+G+ GW TRL + V +++A+ G+ L ++ Sbjct: 121 LRFCHGLVVRSGLLGW----------TRLEQVLPVRWRLRLALAAGGLTALAGGILAGAP 170 Query: 199 AVSALISIVQWIALRAA-----LIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLAS 253 S++ +AL L PL L A+ G + R DE+G LL + Sbjct: 171 LAPMAASVLPPLALACLWLERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRA 230 Query: 254 LRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLAST 313 + Q +NL A+I DV + V+ + A+R+IAS N DL +RT A L++TAS+ Q+A+ Sbjct: 231 VNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATA 290 Query: 314 VRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQT 373 VR +AD A A+ A S A +G D V TM++I+ +S +I +I LIDSIAFQT Sbjct: 291 VRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQT 350 Query: 374 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQV 433 NILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI SV + + G ++ Sbjct: 351 NILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRA 410 Query: 434 EQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAA 493 EQA + IV Q +S ++G I + +QS G++QV ++ +D TQQNA++VE +A Sbjct: 411 EQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSA 470 Query: 494 GAAGSLQEQTVRLLQAISVFKFN 516 A ++Q++ L QA++VF+ + Sbjct: 471 AAVAAMQQRMQTLQQAVAVFEHD 493 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 332 bits (850), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 195/336 (58%), Positives = 248/336 (73%), Gaps = 2/336 (0%) Query: 182 VVAGMVTLHQWWISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIES 241 V G + + ++AAV A I I+ ++ R+ ++KPL +A+ + + GDL+ RIE Sbjct: 185 VADGAMAIEVTLACSMAAVLAAI-ILGYLMARS-IVKPLTEAVRVAENVAAGDLTTRIEP 242 Query: 242 GRHDELGRLLASLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLE 301 DE G+L+ +LR+MN NL I+ VR E+IT A+ EIASGNLDLS RTE QA +LE Sbjct: 243 HSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLE 302 Query: 302 ETASSMHQLASTVRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVD 361 ETAS+M ++ STVRQNAD+A QAN +A +AS IA++GG V TM+EI+QSS KIVD Sbjct: 303 ETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVD 362 Query: 362 IISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDD 421 II +ID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI D Sbjct: 363 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIAD 422 Query: 422 SVAKVEVGNRQVEQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDAS 481 SV KVE G+ V QA TM +V SV+ V+ I+ EI A+ +QS+GI +++ A+TQMD Sbjct: 423 SVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEG 482 Query: 482 TQQNASLVEEAAGAAGSLQEQTVRLLQAISVFKFNR 517 TQQNA+LVE+AA AA S+QEQ VRL Q+IS+FK + Sbjct: 483 TQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 328 bits (841), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 188/307 (61%), Positives = 234/307 (76%), Gaps = 1/307 (0%) Query: 209 WIALRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQMNVNLTAIIGDV 268 W+ R+ + +PL+QA+ I + GDL+ RI+S DE G+LLA+L+ MN NL I+G V Sbjct: 206 WLLTRS-ITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRV 264 Query: 269 RSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQNADHAVQANDLA 328 R ETI A+REIA+GNLDLS RTEAQA +LEETAS+M QL STV+QNAD+A QAN+LA Sbjct: 265 RMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELA 324 Query: 329 GTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNILALNAAVEAARAG 388 +AS +A +GG V TM I SS KI DII +ID IAFQTNILALNAAVEAARAG Sbjct: 325 ASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAG 384 Query: 389 EQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQATRTMRDIVESVQ 448 EQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV KV+ G+R V +A TM+++V+SV Sbjct: 385 EQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVA 444 Query: 449 RVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAAGSLQEQTVRLLQ 508 RV+ ++ EI A+Q+QS GI QV+ AIT +D +TQQNA+LVE+AA AA S+Q+Q L Sbjct: 445 RVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTD 504 Query: 509 AISVFKF 515 A+SVF+ Sbjct: 505 AVSVFRL 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.128 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,333,665 Number of extensions: 50667 Number of successful extensions: 592 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 332 Number of HSP's successfully gapped: 71 Length of query: 518 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 429 Effective length of database: 1,198,455 Effective search space: 514137195 Effective search space used: 514137195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)