BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0429.p
         (477 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase [H...   895   0.0  

>gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/473 (92%), Positives = 449/473 (94%)

Query: 1   MTSIATSHDQDAADSLTWLHIGAGSFHRAHQAVYLNALRESGADRRWQLALANIRADMSP 60
           MT  ATS DQDAADSLTWLHIGAGSFHRAHQAVYLNALRESGADRRWQLALANIRADMSP
Sbjct: 1   MTRTATSIDQDAADSLTWLHIGAGSFHRAHQAVYLNALRESGADRRWQLALANIRADMSP 60

Query: 61  LLEALARQQGQYTLETVTPQGERSYQRIASIGRILPWDAQLTQLIAAGAEERTRIISFTV 120
           LLEALARQQGQYTLETVTPQG+RSYQRIASIGRILPWDAQLTQLIAAGAEERTRIISFTV
Sbjct: 61  LLEALARQQGQYTLETVTPQGQRSYQRIASIGRILPWDAQLTQLIAAGAEERTRIISFTV 120

Query: 121 TEGGYYLDHHYQLDTSNPDLADDLRCALDGSGAPRTIYGAIAAILQARSQAHPQAALTLL 180
           TEGGYYLDH +QLDTSN DLA+DLRCALDGSGAPRTIYGAIAAIL ARSQAHPQAALTLL
Sbjct: 121 TEGGYYLDHQHQLDTSNADLAEDLRCALDGSGAPRTIYGAIAAILHARSQAHPQAALTLL 180

Query: 181 NCDNLRHNGERFRDGLRQFLTLRGQTELVSWMQANTSSPNAMVDRITPRPTSAVAARVKE 240
           NCDNLRHNGERFRDGLRQFLTLRG+T LVSWMQANT+SPNAMVDRITPRPT+AVA RVKE
Sbjct: 181 NCDNLRHNGERFRDGLRQFLTLRGETALVSWMQANTTSPNAMVDRITPRPTAAVAQRVKE 240

Query: 241 KTGIDDPCALMGESFIQWVIEDDFKAGRPRLEQAGVEMVQSVLPYEEAKIRILNASHSCI 300
            TGIDDPCALMGESFIQWVIEDDFKAGRPRLE+AGVEMVQSVLPYEEAKIRILNASHSCI
Sbjct: 241 ATGIDDPCALMGESFIQWVIEDDFKAGRPRLEEAGVEMVQSVLPYEEAKIRILNASHSCI 300

Query: 301 AWAGTLAGLHYIHEGTLRDDIHQMAYDYVTQDVIPCLTPSPIDLVAYRDTTLARFSNPAI 360
           AWAGTLAGL YIHEGTLRDDI QMAYDYVTQDVI CLTPSPIDL AYRDTTLARFSNPAI
Sbjct: 301 AWAGTLAGLQYIHEGTLRDDIRQMAYDYVTQDVIACLTPSPIDLAAYRDTTLARFSNPAI 360

Query: 361 QDTNQRVAADGYSKIPGFIRPTLQESLAAGRDPQATALLPALFLVFLERWNAGQLPYAYQ 420
           QDTNQRVAADGYSKIPGFIRPTLQES+AAGRDP+ATA+LPALFLVFL+RWNAGQLPY YQ
Sbjct: 361 QDTNQRVAADGYSKIPGFIRPTLQESMAAGRDPRATAMLPALFLVFLQRWNAGQLPYEYQ 420

Query: 421 DGIFDPAAARRMLASSDVVQAFCEDAVLWGELAGDARLVALVRTAYGRVQQWL 473
           DGIFDPAA R ML ++D VQAFC DAVLWGELAGDARL  LVR A  RVQQWL
Sbjct: 421 DGIFDPAAVRTMLGAADPVQAFCADAVLWGELAGDARLTKLVREAVQRVQQWL 473


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,595,514
Number of extensions: 69884
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 388
Effective length of database: 1,198,455
Effective search space: 465000540
Effective search space used: 465000540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)