BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0428.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 739 0.0 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 398 e-112 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 381 e-107 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 358 e-100 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 337 7e-94 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/372 (97%), Positives = 366/372 (98%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MAAVSIRNLAKRYDDNEVMRDINL+IEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 DIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 DIGARRMN+VPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FIDGAVAAIQADGVQVQLPGGGLQWAAVDGGALQVGQKVTLGVRPEHLNIAQGQAALQAR 300 FIDG VAAIQADGVQVQLPGGGLQWAAVDG LQVGQKVTLGVRPEHLNIAQGQAALQAR Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAALQAR 300 Query: 301 CTALELLGDFSYLYAAYEGSEDALILRVPDSLDPPHGSVLPLAADPARCHLFGADGQALP 360 CTALELLGDFSYLYAAYEGSEDALILRVPDSLD PHGSVLPLAADPARCHLFGADGQALP Sbjct: 301 CTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQALP 360 Query: 361 RLASSVAALRAH 372 RLASSVAA R H Sbjct: 361 RLASSVAAPRPH 372 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/375 (56%), Positives = 260/375 (69%), Gaps = 4/375 (1%) Query: 1 MAAVSIRNLAKRYDDN-EVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 MA V+I+ L K YD +V+ +NLDI DGEF V VGPSGCGKSTLLRM+ GLEEIS G+ Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 LDIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 L IG + +N +P ++RG+AMVFQSYALYPHM++Y NMAFGLK+AG SK++IDA ++HAA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 IL IDHLL R PR LSGGQRQRVAIGRAI RQP +FLFDEPLSNLDAALRV+ RLE AKL Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKM 239 H L T++YVTHDQ+EAMTL DKIVV+ EGRI+Q G+P +LY P N FVAGFIGSPKM Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NFIDGAVAAIQADGVQVQLPGGGLQWAAVDGGALQVGQKVTLGVRPEHLNIAQGQAA-LQ 298 NF G V GVQV++ GG A VD + G VTLG+R E + G L Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLH 300 Query: 299 ARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDPPHGSVLPLAADPARCHLFGADGQA 358 +E LG+ ++LY +G D +++R + + G + L+ HLF A GQA Sbjct: 301 GVVNLVEHLGEANFLYVTLDGGHD-IVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQA 359 Query: 359 LPRLA-SSVAALRAH 372 L R ++ A R H Sbjct: 360 LRRRTPGNLQAARRH 374 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 381 bits (978), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/371 (53%), Positives = 261/371 (70%), Gaps = 11/371 (2%) Query: 1 MAAVSIRNLAKRYDDNE-VMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 MA++++R K Y D V+R+++LDI + EF VF+GPSGCGKSTLLR IAGLE+++ GD Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 LDIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 L IG +R+NDVP+++R VAMVFQSYAL+PHM++Y+NM+FGL +A KAEI+ V+ AA+ Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 IL ++ LL RKP+ LSGGQRQRVAIGRAI R+P VFLFDEPLSNLDA LR + R+E A+L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HDDL-KTTMIYVTHDQIEAMTLADKIVVLSE-------GRIEQVGSPQQLYHHPANRFVA 231 H + +++YVTHDQ+EAMTLAD+IV+L G I QVG+P +LYHHP NRFVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 232 GFIGSPKMNFIDGAVAAIQADGVQVQLPGGGLQWAAVDGGALQVGQKVTLGVRPEHLNI- 290 GFIGSP+MNF+ VA +Q +G+ V+L G GALQ GQ VT+GVRPEH+ I Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 291 AQGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDPPHGSVLPLAADPARCH 350 +QGQ + +E LG+ +Y++ E + L+ + G + +A PA + Sbjct: 301 SQGQYGIHREVVLVERLGEQTYVHLD-EPAGQPLVAKAAGDARITRGERVRVAIAPACAY 359 Query: 351 LFGADGQALPR 361 LF DG AL R Sbjct: 360 LFDQDGLALTR 370 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/362 (53%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MA+V IR + K++ +++R +++DI DGEF V VGPSGCGKSTLLRM+AGLEEI+ G++ Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 DIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 IG +N+V R +AMVFQ+YALYPHM++ DNMAF L +A K KA +D V+ AA I Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 LKTT IYVTHDQIEAMT+AD+IVV+ +G +EQ G P LY +PAN FVAGFIGSP MN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIDGAVAAIQADGVQVQLPGGGLQWAAVDGGALQV--GQKVTLGVRPEHLNIAQGQAALQ 298 FI A A G +V+ G + A G ALQ GQKVT GVRPEHL+I + Sbjct: 241 FIP-ATLRRNATGAEVEF-ADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQGIA 298 Query: 299 ARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDPPHGSVLPLAADPARCHLFGAD-GQ 357 + +E G + +++ + + I R + D G V+ L D +R HLF A+ G+ Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFR--ERHDFGAGDVIHLVPDHSRTHLFDAESGK 356 Query: 358 AL 359 +L Sbjct: 357 SL 358 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 337 bits (865), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 187/362 (51%), Positives = 240/362 (66%), Gaps = 17/362 (4%) Query: 1 MAAVSIRNLAKRYDDN----EVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 MAA+ ++ + K Y +V+ I+ +I DGEF+V VGPSGCGKSTLLRM+AGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 DGDLDIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 G + IG R +ND+ +R +AMVFQ+YALYPHM++Y NMA+GLKI G SK+EIDA VQ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 KLH L+TT +YVTHDQ+EAMTL +++V++ G EQ+G+P ++Y PA FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PKMNFIDGAVAAIQADGVQVQLPGGG----LQWAAVDGGALQVGQKVTLGVRPEH-LNIA 291 P MN + G ++ ADG ++ G L+ GA GQ+ LGVRPEH L I Sbjct: 241 PPMNLLQGKLS---ADGASFEVSKGNASDILRLPQPLTGA--AGQERILGVRPEHLLPIL 295 Query: 292 QGQAA-LQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDPPHGSVLPLAADPARCH 350 G AA L +E LG ++A G AL+LR P ++ G + + H Sbjct: 296 DGSAAQLSLEVELVEALGAELLVHARCGG--QALVLRCPANVQVRTGQRIGASFGAGDVH 353 Query: 351 LF 352 F Sbjct: 354 WF 355 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,150,731 Number of extensions: 48370 Number of successful extensions: 588 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 361 Number of HSP's successfully gapped: 142 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)