BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0427.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...   417   e-118
gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...    96   2e-21
gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herb...    64   8e-12

>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/244 (86%), Positives = 223/244 (91%), Gaps = 4/244 (1%)

Query: 1   MTARQTITHLICDCDGVLLDSESIALAVLHRELLALLPACS----SDDGPPQAQRSAALH 56
           M  RQ ITHLICDCDGVLLDSESIAL VLHRELL LLPA S    +DDG  + QRSAALH
Sbjct: 1   MMTRQAITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGAGGADDGEQEEQRSAALH 60

Query: 57  AAIANRLGMYTDLLLGEVDLEFELGLDAAQVERIHQTVALACGEQAQPVPGIVEALQEIR 116
           AAIA+RLGMYTD+LLGEVD+EFELGLDAAQ ERIHQTVALACG++A PVPG+VEALQ IR
Sbjct: 61  AAIAHRLGMYTDILLGEVDMEFELGLDAAQAERIHQTVALACGDEALPVPGVVEALQAIR 120

Query: 117 LPRAVASNSDAPRIEAGLRRCGLYAQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPAR 176
           LPRAVASNSDAPRIEAGLRRCGLY QFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDP+R
Sbjct: 121 LPRAVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPSR 180

Query: 177 CVAVDDSVTGVRAAVAAGMYVLGFTGVAHDRKAMAGKLREAGAHQVFEEMKQFPQLVCEL 236
           CVAVDDSVTGVRAAVAAGM+VLGFTGVAHDRK MA KL++AGAHQVFE+MK FPQLV EL
Sbjct: 181 CVAVDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMKLFPQLVSEL 240

Query: 237 IWLR 240
           IWLR
Sbjct: 241 IWLR 244


>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score = 96.3 bits (238), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 13/191 (6%)

Query: 10  LICDCDGVLLDSESIALAVLHRELLALLPACSSDDGPPQAQRSAALHAAIANRLGMYTDL 69
           +I DCDG L+DSE +A       +       + +D             A+A   G+    
Sbjct: 11  VIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPED-------------ALARFRGVSMSW 57

Query: 70  LLGEVDLEFELGLDAAQVERIHQTVALACGEQAQPVPGIVEALQEIRLPRAVASNSDAPR 129
            +  V       L A   + +   + +   +  QP+ G +E ++++++P A+ASN+   +
Sbjct: 58  CIAHVAQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQLQIPFALASNAPHHK 117

Query: 130 IEAGLRRCGLYAQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPARCVAVDDSVTGVRA 189
           IE  LR  GL   F GRI+S +DV   KP P ++L AA   GV PARC  V+DS+ GV+A
Sbjct: 118 IELCLRVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQA 177

Query: 190 AVAAGMYVLGF 200
            +AAGM V+  
Sbjct: 178 GLAAGMKVIAL 188


>gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 64.3 bits (155), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 30/228 (13%)

Query: 7   ITHLICDCDGVLLDSESIALAVLHRELLALLPACSSDDGPPQAQRSAALHAAIANRLGMY 66
           ITH + D DG L+DS+++  A  +  +LA            +  R   +     + +G  
Sbjct: 62  ITHFLFDLDGTLMDSDALHHAAFN-TILA------------RWDRHIDVEYYKTHIMGAS 108

Query: 67  TDLLLGEVDLEFELGLDAAQ----VERIHQTVALACGEQAQPVPGIVEALQEIRL---PR 119
             ++ G +   F  G+ A Q     E           ++ +P PGI   L+ IR      
Sbjct: 109 NAMIFGHL---FP-GMPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRS 164

Query: 120 AVASNSDAPRIEAGLRRCGLYAQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPARCVA 179
           AV +N+     E  L+  GL  QF   +  G ++A  KP P  YL      G +    VA
Sbjct: 165 AVVTNAPRANAELMLKATGLAGQFDTLVI-GDELARAKPDPLPYLTGLQLLGGEAGAAVA 223

Query: 180 VDDSVTGVRAAVAAGMYVLGFTGVAHDRKAMAGKLREAGAHQVFEEMK 227
            +DS +GV+AA +AG++  G  G   +      +LR AGAH V  +  
Sbjct: 224 FEDSSSGVKAASSAGIWTFGMLGGLDE-----ARLRAAGAHAVIRDFN 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 755,498
Number of extensions: 32594
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)