BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0423.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309780|ref|YP_003773872.1| transcription regulator [Herbas...   622   e-180
gi|300312385|ref|YP_003776477.1| SorC family transcription regul...    97   3e-21

>gi|300309780|ref|YP_003773872.1| transcription regulator
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  622 bits (1605), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 303/320 (94%), Positives = 308/320 (96%)

Query: 1   MSSSASKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 60
           MSSS SKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV
Sbjct: 1   MSSSTSKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 60

Query: 61  SSCLELAQGLQQRYGLQVCRVVPGAGGAANPNESQEVQQMLAVAGAELMEQYLSSHAPLV 120
           SSCLELAQGLQ+RYGL VCRVVPGAGGA NPNESQEVQQMLAVAGAELMEQYL S APLV
Sbjct: 61  SSCLELAQGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLV 120

Query: 121 VNVGSGRTLKAAIERLSELDRPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 180
           VNVGSGRTLKAAIERLSEL+RPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP
Sbjct: 121 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 180

Query: 181 APRVAESASDRQQWCNHRAYKIVTGLAARADVTFLGIGTIALQGAMHEDGFIDDDEVADL 240
           APRVAES SDRQQWCNHRAYKIVTGLA RADVTFLGIGTIALQGAMHEDGFIDD EVA+L
Sbjct: 181 APRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAEL 240

Query: 241 QRQGAVGEMICHAFDIDGAMLPSSLAARVTTPPLAQDPQRPVIAFCGGSKKADAVRAALR 300
           QRQGAVGEMICHAFDIDG MLPSSL+ARVTTPPL Q PQRPVIAFCGGSKKA+AVRAALR
Sbjct: 241 QRQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALR 300

Query: 301 GGWLTGLVTDEACARHALQD 320
           GGWLTGLVTDE CARHALQD
Sbjct: 301 GGWLTGLVTDEVCARHALQD 320


>gi|300312385|ref|YP_003776477.1| SorC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 19/314 (6%)

Query: 10  LAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHP--VSSCLELA 67
           +A R A +YY    T   IA+ +G SR    R++++A +  LV++++  P  VS  LE A
Sbjct: 12  MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA 71

Query: 68  QGLQQRYGLQVCRVVPGAGGAANPNESQEVQQMLAVAGAELMEQYLSSHAPLVVNVGSGR 127
             +   Y L   +VVP A  A +    +E  Q +    A  +   ++     ++ +  G 
Sbjct: 72  --IANHYRLHSIQVVPVAAAATD----KETLQRVTCHAAAYVNSLVTPGT--IIGLAWGT 123

Query: 128 TLKAAIERLSELDRPQHQI--VSMIGAFASDGSANRYDVAL--QAAEKLGARFYLLPAPR 183
           T+    ++L  L R  H +  V++ G+ +     N +  ++  + A+  GAR + LP P 
Sbjct: 124 TVAQIADQL--LPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPA 181

Query: 184 VAESASDRQQWCNHRAYKIVTGLAARADVTFLGIGTIALQGAMHEDGFIDDDEVADLQRQ 243
             +    R      ++ K +  L  RA +    IG  A    +H  G++ ++E   L+ +
Sbjct: 182 FFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDE 241

Query: 244 GAVGEMICHAFDIDGAMLPSSLAARVTTPPLAQDPQRPVIAFC--GGSKKADAVRAALRG 301
           G VG++    F  DG+    +  AR + P +     R   A C   G+ K   ++AALRG
Sbjct: 242 GLVGDIATVFFRADGSWRDVAFNARNSGPDM-DCFTRAAHALCVVSGAGKLPGLKAALRG 300

Query: 302 GWLTGLVTDEACAR 315
           G++  L+ DE  AR
Sbjct: 301 GFINELIIDEPSAR 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,813
Number of extensions: 41569
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)