BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0421.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309776|ref|YP_003773868.1| DnaJ-class molecular chaperone ...   330   8e-92

>gi|300309776|ref|YP_003773868.1| DnaJ-class molecular chaperone
           protein [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  330 bits (847), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 201/365 (55%), Positives = 264/365 (72%), Gaps = 10/365 (2%)

Query: 8   MKKP-PQALSISDLDQEVALSHAQKRFNDLIKQIGKRRASLLEWESATADFQKKYVDQFL 66
           M KP P  +++ +      LS AQ++FN LI  IG RRA L EWE+A+ +F +KY  Q++
Sbjct: 1   MHKPTPHDVTLVNGQSATRLSPAQEKFNALIDAIGARRARLKEWETASDEFHRKYAAQYV 60

Query: 67  PLDQELQQLRRKLVQRLHEAWSEKGLTKGERAMLSEIIADMAHMLLGKADDPELKLIYNQ 126
           PL+QEL  L+R+ V RLHEAW+ K L KGER  LS +IADMA  LL +++D EL LIY Q
Sbjct: 61  PLEQELLGLKRQAVYRLHEAWAHKALGKGERITLSALIADMAQALLQRSEDAELALIYQQ 120

Query: 127 HSASDYDLEARSELDEV--KQVIEEMLDIDLGDDLGEGSPEEIMQRMEAILEQKEREQMA 184
           H+  ++  E           + I E       DD   G+PEEIMQRMEA+LE++ERE+ A
Sbjct: 121 HAEEEHAAEIAHAPSPPGGNESIAE-------DDFTTGTPEEIMQRMEAMLERQERERQA 173

Query: 185 AEQAREERRASRKKSPRQRAAEVKQETERKELSQSIREVYRKLASALHPDREPDASERQR 244
           A QARE  RASRKK P+QRAAE +Q+ +R ELSQSIR VYR+LASALHPDREPD  ER R
Sbjct: 174 AAQAREAGRASRKKPPKQRAAEHQQQAQRTELSQSIRAVYRRLASALHPDREPDEDERTR 233

Query: 245 KTLLMQQVNQAYEKNDLLKLLELQLELEHIDQHAINGISAERLKHYNQILKEQLGELDQE 304
           KT LMQQVNQAYEKNDLLKLLELQLELEHI +H    +S  RL HYNQIL+EQ  ELDQE
Sbjct: 234 KTALMQQVNQAYEKNDLLKLLELQLELEHITRHTQTEVSEARLAHYNQILQEQADELDQE 293

Query: 305 VFHVEQQFKQTYGLPPSARVSAKTIVRNLNKDMSLMRDDGKELRSALASFADVQEIKVWL 364
           + HV++QF++ YGLP +AR++ + ++R LN+ ++ +R +G++LR+ALA+F D+++++ WL
Sbjct: 294 IIHVQRQFRRAYGLPSTARLTPEKMMRYLNRGITALRQEGQDLRAALAAFGDIEQVRSWL 353

Query: 365 RLGRR 369
           +  RR
Sbjct: 354 KHARR 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,648
Number of extensions: 25898
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)