BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0415.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...   676   0.0  
gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   238   5e-64

>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/401 (93%), Positives = 385/401 (96%), Gaps = 1/401 (0%)

Query: 10  SAPTPA-PARALPPAKVTRQIIATAFFTFLVYLAIGIPLAVLPGYIHLDLGYSSVMAGLG 68
           + P PA P R L PAKVTRQIIATAFFTFLVYLAIGIP+AVLPGYIHLDLGYSSVMAGLG
Sbjct: 12  ATPVPAAPPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLG 71

Query: 69  ISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLCAASGALLLCSALAQPLPFLSLVLLL 128
           ISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLC+ASGALLLCSALAQPLPFLSLVLL 
Sbjct: 72  ISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLLF 131

Query: 129 VSRAFLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYSALAIGAPLGVVLDRSLG 188
            SRA LGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATY+ALAIGAPLGVVLDRSLG
Sbjct: 132 ASRALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLG 191

Query: 189 FGMIGLAGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIA 248
           F MIGL+GMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIA
Sbjct: 192 FAMIGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIA 251

Query: 249 TFITLYYADLHWSGAAFALTAFSSAFVGARLLFANAINRFGGYRVAVVSFITEAIGLLLL 308
           TFITLYYADLHWSGAAFALTAFSSAFVGARLLFANAI RFGGYRVAVVSF+TEA+GLLLL
Sbjct: 252 TFITLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLL 311

Query: 309 WSATTPELALLGAALAGFGFALVFPSLGVEAVNLVTPANRGAALAAYSVFLDLALGVTGP 368
           WS TTPELALLGA LAGFGFALVFPSLGVEAVNLV+PANRGAALAAYSVFLDLALG+TGP
Sbjct: 312 WSTTTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITGP 371

Query: 369 LAGAIAGQLGYAQVFLFAAIAAIGGVALSLSLYRSAQQRDK 409
           LAGAIAGQLGY QVFLFAAIAAIG VALSLSLYRSAQQR K
Sbjct: 372 LAGAIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQRGK 412


>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  238 bits (608), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 157/380 (41%), Positives = 217/380 (57%), Gaps = 4/380 (1%)

Query: 13  TPAPARALPPAK----VTRQIIATAFFTFLVYLAIGIPLAVLPGYIHLDLGYSSVMAGLG 68
           T  PAR  P A     V  ++       F+ +L IG+ L VLP ++   LG ++ + G+ 
Sbjct: 6   TDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKDALGMNATVVGVV 65

Query: 69  ISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLCAASGALLLCSALAQPLPFLSLVLLL 128
           +  Q+ A  +SRA AG   D  GAK+ VM G +  A SG + L S      P  S+ +LL
Sbjct: 66  VGAQFAAALLSRAWAGNFADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWSVAVLL 125

Query: 129 VSRAFLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYSALAIGAPLGVVLDRSLG 188
           + R  L LGESL+ TGA+ WG+G VG ++  K+++W GIA Y+A   GAPLGV +++  G
Sbjct: 126 LGRVVLALGESLMVTGAMSWGIGLVGPQHGGKVMAWLGIALYAAFGAGAPLGVAINQIYG 185

Query: 189 FGMIGLAGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIA 248
           F  I LA + L+    +L             +  F  VL  V+  G+GLAF ++GFG I 
Sbjct: 186 FAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVGFGVIT 245

Query: 249 TFITLYYADLHWSGAAFALTAFSSAFVGARLLFANAINRFGGYRVAVVSFITEAIGLLLL 308
            FI L +A   W  AA A +AF +AF+ ARLLFA+  ++ GG RVA+V  + EA G LL+
Sbjct: 246 AFIALLFAARAWGNAALAFSAFGAAFILARLLFAHLPDKLGGARVALVCVLIEAAGQLLI 305

Query: 309 WSATTPELALLGAALAGFGFALVFPSLGVEAVNLVTPANRGAALAAYSVFLDLALGVTGP 368
           W A     A LGAAL GFG++L FP  GVEA+    P  RG A+ AY  FLDL+LG+T P
Sbjct: 306 WQADAAHWAYLGAALTGFGYSLAFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSLGITSP 365

Query: 369 LAGAIAGQLGYAQVFLFAAI 388
           LAG +A   G   ++L  A+
Sbjct: 366 LAGVLASHAGVQSIYLAGAV 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,064,618
Number of extensions: 43753
Number of successful extensions: 342
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)