BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0392.p
         (545 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309756|ref|YP_003773848.1| bifunctional phosphoribosylamin...  1065   0.0  

>gi|300309756|ref|YP_003773848.1| bifunctional
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 523

 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/523 (98%), Positives = 520/523 (99%)

Query: 23  MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD 82
           MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD
Sbjct: 1   MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD 60

Query: 83  GRVKTLHPKVHGGILARRDFPEHVAALEQHGIPTIDMVVVNLYPFQQTVAKDECSLEDAI 142
           GRVKTLHPKVHGGILARRDFPEHVAAL+QHGIPTIDMVVVNLYPFQQTVAK+ECSLEDAI
Sbjct: 61  GRVKTLHPKVHGGILARRDFPEHVAALQQHGIPTIDMVVVNLYPFQQTVAKEECSLEDAI 120

Query: 143 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYDGVLAELKSGGDLPYEKRFALAKKVFAHTA 202
           ENIDIGGPAMLRSSAKNHKDVIVICDPTDY+GVLAELKSGGDLPYEKRFALAKKVFAHTA
Sbjct: 121 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYEGVLAELKSGGDLPYEKRFALAKKVFAHTA 180

Query: 203 QYDGAITNYFTSLGEDKQHSTRSAYPATLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDG 262
           QYDGAITNYFTSLGEDKQHSTRSAYP+TLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDG
Sbjct: 181 QYDGAITNYFTSLGEDKQHSTRSAYPSTLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDG 240

Query: 263 ALANYTQLQGKELSFNNIADADAAWECVKSFDPALEAACVIIKHANPCGVAIGANPLEAY 322
           ALANYTQLQGKELSFNNIADADAAWECVKSFDPA EAACVIIKHANPCGVAIGANPLEAY
Sbjct: 241 ALANYTQLQGKELSFNNIADADAAWECVKSFDPATEAACVIIKHANPCGVAIGANPLEAY 300

Query: 323 SKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLL 382
           SKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLL
Sbjct: 301 SKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLL 360

Query: 383 EIPLGKGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPTQQQLQDLMFAWRVAKF 442
           EIPLG GLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPT QQLQDLMFAWRVAKF
Sbjct: 361 EIPLGTGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPTPQQLQDLMFAWRVAKF 420

Query: 443 VKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLD 502
           VKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLD
Sbjct: 421 VKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLD 480

Query: 503 VVVDAGATCVIHPGGSMRDQEVVDAANERDVVMLLTGTRHFRH 545
           VVVDAGATCVIHPGGSMRDQEV+DAANERDVVMLLTGTRHFRH
Sbjct: 481 VVVDAGATCVIHPGGSMRDQEVIDAANERDVVMLLTGTRHFRH 523


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,654,281
Number of extensions: 69083
Number of successful extensions: 210
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,193,720
Effective search space: 543142600
Effective search space used: 543142600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)