BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0389.p
         (455 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309753|ref|YP_003773845.1| HipA domain-containing protein ...   859   0.0  
gi|300313385|ref|YP_003777477.1| HipA domain-containing protein ...    80   4e-16

>gi|300309753|ref|YP_003773845.1| HipA domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/455 (94%), Positives = 439/455 (96%)

Query: 1   MVTARRRKPKELGLWMNGSFVGTWALTAQGDSLQYDARWAASASGRPLSLSLPFRPGNPP 60
           MVT+RRRKPKELGLWMNGSFVGTWALTAQGDSLQYDARW  SASGRPLSLSLPFRPGNPP
Sbjct: 1   MVTSRRRKPKELGLWMNGSFVGTWALTAQGDSLQYDARWVVSASGRPLSLSLPFRPGNPP 60

Query: 61  HRGDLVRHYFENLLPDSKAIRERLARRYQAADNDAFALLAEAGRDCVGALQILPLGTTPE 120
           HRGDLVRHYFENLLPDSKAIRERLARRYQAAD DAFALL EAGRDCVGALQILPLG TPE
Sbjct: 61  HRGDLVRHYFENLLPDSKAIRERLARRYQAADTDAFALLGEAGRDCVGALQILPLGATPE 120

Query: 121 LSWSIDARPLSEREVAELLHQTLEPTPLALIEGEELRLSIAGAQEKTALLRHLDQWCWPH 180
           LSW+IDARPL EREVAELL QT+EPTPLAL +GEELRLSIAGAQEKTALLR+LDQWC PH
Sbjct: 121 LSWTIDARPLREREVAELLRQTMEPTPLALTQGEELRLSIAGAQEKTALLRYLDQWCLPH 180

Query: 181 GATPTTHILKLPMGLVGGLQLDLRHSVENEWLCSRILAAYGMPVAACDILCFEDQKVLAV 240
           GATPTTHILKLPMGLVGGLQLDLRHSVENEWLCSRILAAYGMPVAACDI CFEDQKVLAV
Sbjct: 181 GATPTTHILKLPMGLVGGLQLDLRHSVENEWLCSRILAAYGMPVAACDIFCFEDQKVLAV 240

Query: 241 ERFDRRWSRDPASGQATLLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPV 300
           ERFDRRWSRDPASGQ  LLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPV
Sbjct: 241 ERFDRRWSRDPASGQTMLLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPV 300

Query: 301 AARRHFFKAQLLFWMLWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLSS 360
           AARRHFFKAQLLFWMLWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLS 
Sbjct: 301 AARRHFFKAQLLFWMLWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLSP 360

Query: 361 HRAAMAMAVRGKNAHRKMKEILPRHWMALGIHFGIVAENGDGPRAILQELAEQTDQVIAK 420
           HRAAMAMAVR KNAHRKMK+ILPRHWMALG HFGIVAENGDGP AIL+ELAEQT+QVIAK
Sbjct: 361 HRAAMAMAVRAKNAHRKMKDILPRHWMALGSHFGIVAENGDGPLAILEELAEQTEQVIAK 420

Query: 421 VQADLPPGFPSELAASILDGLRRSASSLLSFVQTA 455
           VQADLPPGFPSELAASILDGLRRSASSLLSFVQTA
Sbjct: 421 VQADLPPGFPSELAASILDGLRRSASSLLSFVQTA 455


>gi|300313385|ref|YP_003777477.1| HipA domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 131/331 (39%), Gaps = 27/331 (8%)

Query: 32  SLQYDARWAASASGRPLSLSLPFRPGNPPHRGDLVRHYFENLLPDSKAIRERLARRYQAA 91
           +  Y A W  S    PLS       G    +     ++  NL P+  A    +      A
Sbjct: 29  NFYYYAHWQLSTETFPLSPHFALSQGR--FKSSATANFMMNLFPEGDARMAIMKHSRLNA 86

Query: 92  DNDAFALLAEAGRDCVGALQILPLGTTPEL--SWSIDARPLSEREVAELLHQTLEPTPLA 149
           DN  F++    G +  GA   L    T  L  S +   R + + E++E +H      P A
Sbjct: 87  DN-VFSMAYLFGAEPAGAASFLFHSGTSALPSSQAPYLREIDDDELSERIHARHRGVPFA 145

Query: 150 LIEGEELRLSIAGAQEKTALLRHLDQWCWPHGATPTTHILK-LPMGLVGGLQLDLRHSVE 208
              G     S+AG Q+K  ++ H ++     G+  +THILK  P G          H V 
Sbjct: 146 QWHGA-WHQSLAGVQDKLQVIFHDERLFLAGGSLTSTHILKPEPQG------ERTPHLVA 198

Query: 209 NEWLCSRILAAYGMPVAACDILCFEDQKVLAVERFDRRWSRDPASGQ-ATLLRLPQEDMC 267
           NE  C  + AA G+ V    I     + VL ++RFDR ++      Q   + R    D C
Sbjct: 199 NEHFCMSLAAAVGLSVPHVKIHR-APEAVLLIDRFDRTYAPGTDVLQPGRVERTHIIDGC 257

Query: 268 QATGISPWLKYEADGGP-----------GMKEIMALLGGAIDPVAARRHFFKAQLLFWML 316
           QA  +  W KYE  GG              K +  L     D  AA+    +  L   ++
Sbjct: 258 QALELPSWYKYECLGGHQNRSPERRYGIDFKRLFGLAPHFEDASAAKLLIVRWALFNLLI 317

Query: 317 WATDGHAKNFSLFLKAGGRYEPTPLYDVLSV 347
             +D H KN S    A G   P P YD++SV
Sbjct: 318 GNSDAHGKNISFRQTANG-IMPAPFYDLVSV 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,643,294
Number of extensions: 75878
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,203,190
Effective search space: 441570730
Effective search space used: 441570730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)