BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0387.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309751|ref|YP_003773843.1| phosphoglycerate mutase 2 prote...   409   e-116
gi|300309505|ref|YP_003773597.1| 2,3-bisphosphoglycerate-depende...    59   2e-10

>gi|300309751|ref|YP_003773843.1| phosphoglycerate mutase 2 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  409 bits (1051), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/214 (92%), Positives = 205/214 (95%)

Query: 1   MTDILLIRHGETDWNVDKRLQGHIDIGLNQAGQRQVLALGEALAGEGIDAIFASDLQRAR 60
           MT+ILLIRHGETDWNVDKRLQGHIDIGLN AGQRQVLALGEALA EGIDA+FASDLQRAR
Sbjct: 1   MTEILLIRHGETDWNVDKRLQGHIDIGLNAAGQRQVLALGEALAAEGIDAVFASDLQRAR 60

Query: 61  DTAQAVADAAGLEVLIDAGLRERCYGAFEGLRHIEIEARYPDAYRQWKARDPDYRYPAGE 120
           DTAQAVA  AGL V IDAGLRERCYGAFEGLRH EIEARYPDAYRQWKARDPD+RYPAGE
Sbjct: 61  DTAQAVAGTAGLTVQIDAGLRERCYGAFEGLRHSEIEARYPDAYRQWKARDPDFRYPAGE 120

Query: 121 RIAETMREFYERSVQAVQRALASGRYRKVAIVTHGGVLECVHHWASQTSFSQPRSFDIFN 180
           R+AETMREFYERSVQA+QR LASGRY KVAIVTHGGVLECVHHWASQTSF+QPR+FDIFN
Sbjct: 121 RVAETMREFYERSVQAMQRVLASGRYGKVAIVTHGGVLECVHHWASQTSFAQPRTFDIFN 180

Query: 181 ASVNRLHWDGQRAHIRSWGEIGHLQRETLDEVDR 214
           ASVNRLHWDGQRAHIRSWGEIGHLQRETLDEVDR
Sbjct: 181 ASVNRLHWDGQRAHIRSWGEIGHLQRETLDEVDR 214


>gi|300309505|ref|YP_003773597.1| 2,3-bisphosphoglycerate-dependent
           phosphoglycerate mutase [Herbaspirillum seropedicae
           SmR1]
          Length = 248

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 90/226 (39%), Gaps = 28/226 (12%)

Query: 1   MTDILLIRHGETDWNVDKRLQGHIDIGLNQAGQRQVLALGEAL--AGEGIDAIFASDLQR 58
           M  I+ +RHGE+ WN+  R  G +D+ L + G  +    G+ L  AG   D  + S L+R
Sbjct: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFTFDLAYTSVLKR 60

Query: 59  ARDTAQAVADAAG---LEVLIDAGLRERCYGAFEGLRHIEIEARYPD----AYRQWKARD 111
           A  T     D      + +  D  L ER YGA +GL   E  A+Y D     +R+     
Sbjct: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120

Query: 112 PDYRYPAGER-----------------IAETMREFYERSVQAVQRALASG--RYRKVAIV 152
           P+   P  ER                 + E +++   R + A   A+A      +++ I 
Sbjct: 121 PNPLTPGEERDAFGDPRYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIIS 180

Query: 153 THGGVLECVHHWASQTSFSQPRSFDIFNASVNRLHWDGQRAHIRSW 198
            HG  L  +  +    S +     +I N        D     I+S+
Sbjct: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSY 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 678,304
Number of extensions: 26883
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)