BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0386.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309750|ref|YP_003773842.1| hypothetical protein Hsero_0409...   430   e-122
gi|300312199|ref|YP_003776291.1| phospholipid-binding protein [H...    78   4e-16

>gi|300309750|ref|YP_003773842.1| hypothetical protein Hsero_0409
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/215 (96%), Positives = 212/215 (98%)

Query: 1   MKFWSDSFKDGGNIPGEFAFAVMDPKTHVALSANRNPHFAWSELPAGTKSLALVVHDPDV 60
           MKFWSDSFKDG  IPGEFAFAVMDPKTHVALS NRNPHFAWSELPAGTKSLALVVHDPDV
Sbjct: 1   MKFWSDSFKDGATIPGEFAFAVMDPKTHVALSGNRNPHFAWSELPAGTKSLALVVHDPDV 60

Query: 61  PSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPASVSQIKAGQFSNGVSARGKPGPAVLGD 120
           PSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPASV++IKAGQFSNGV+ARGKPGPAVLG+
Sbjct: 61  PSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPASVTEIKAGQFSNGVTARGKPGPAVLGE 120

Query: 121 VMPGARQGINDYTGWFAGDGDMRGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQLPVAG 180
           VMPGARQGINDYTGWFAGDGDMRGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQLPVAG
Sbjct: 121 VMPGARQGINDYTGWFAGDGDMRGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQLPVAG 180

Query: 181 NLEGSVVLTALRDHVLEQASITGLYTLNPNAVPRS 215
           NLEGSVV+TALRDHVLEQASITGLYTLNPNAVPRS
Sbjct: 181 NLEGSVVVTALRDHVLEQASITGLYTLNPNAVPRS 215


>gi|300312199|ref|YP_003776291.1| phospholipid-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score = 78.2 bits (191), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 42/172 (24%)

Query: 34  NRNPHFAWSELPAGTKSLALVVHDPDVPSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPA 93
           N++P  +WS  PA TKS A+ V+DPD P+                    ++HWT+ +IPA
Sbjct: 55  NKSPQLSWSGAPADTKSFAITVYDPDAPTGS-----------------GWWHWTVFNIPA 97

Query: 94  SVSQIKAGQFSNGVSARGKPGPAVLGDVMPGARQGINDYTGWFAGDGDMRGDYFGYDGPC 153
           SV  + A     G +A GK  PA       G+ QG  D+               G+ G C
Sbjct: 98  SVRSLPA-----GATAPGKGLPA-------GSIQGRTDF------------GSSGFGGAC 133

Query: 154 PPWNDALVHRYIFTLYALDVEQLPVAGNLEGSVVLTALRDHVLEQASITGLY 205
           PP  D   HRY F ++AL  E LP+     G+++   L    L  A +T +Y
Sbjct: 134 PPEGDK-PHRYQFVVWALKTETLPLDAQASGAMLGFYLNAQALATAKLTAVY 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,902
Number of extensions: 38239
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)