BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0383.p
         (515 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase [...   946   0.0  
gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptid...    65   2e-11

>gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/482 (93%), Positives = 468/482 (97%)

Query: 34  NTRPPPRKHQILTYSVCMFPQDKLKHLTSRCCSALQSCHHKVAASSPKTRIIGASALFLA 93
           +TR  PRKHQILTYSVCMFPQDKLKH +S C S LQSCHHKVAASSPKTRIIGASALFLA
Sbjct: 25  HTRYRPRKHQILTYSVCMFPQDKLKHASSLCFSVLQSCHHKVAASSPKTRIIGASALFLA 84

Query: 94  AFTIGAAGFAPAEPDLRDAPVNPISKELALPDLQQQISALEERSQYYVNEERVRSGDTLA 153
           AFTIGAAGFAPAEPD++DAPVNPISKELALPDLQ QISALEE+SQYYVNEE+VRSGDTLA
Sbjct: 85  AFTIGAAGFAPAEPDMKDAPVNPISKELALPDLQHQISALEEQSQYYVNEEKVRSGDTLA 144

Query: 154 SLLNRLGVDDDEATAFIKSDTLARSVMQLRAGKRVVAQTDDNGELVKLSATLDDGSDTPK 213
           +LLNRLGVDDDEA AFIKSDTLARSVMQLRAGKRVVAQTDDNGELVKLSATLDDGSD PK
Sbjct: 145 TLLNRLGVDDDEAMAFIKSDTLARSVMQLRAGKRVVAQTDDNGELVKLSATLDDGSDAPK 204

Query: 214 NLVISRQDGKLTAQAQPAVLERRVEMRAGIIYSSLFAATDAAQIPDAVAMQLVDMFATNI 273
           NLVISR DGKL+A+AQPAVLERRVEMR+G+I+SSLFAATDA QIPDAVAMQLVDMFATNI
Sbjct: 205 NLVISRHDGKLSAEAQPAVLERRVEMRSGVIFSSLFAATDAVQIPDAVAMQLVDMFATNI 264

Query: 274 NFASDLRRGDRFNVVYETYYQNGDLVRTGRVLAGEFDNAGNRYQAVWFSDPASKTGGGGY 333
           NFASDLRRGDRFNVVYET++QNGDLVRTGRVLAGEFDNAGNRYQAVWFSDPASKTGGGGY
Sbjct: 265 NFASDLRRGDRFNVVYETFWQNGDLVRTGRVLAGEFDNAGNRYQAVWFSDPASKTGGGGY 324

Query: 334 YAFDGKSLKKAFLKSPLAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGV 393
           YAFDGKSLKKAFLKSPLAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGV
Sbjct: 325 YAFDGKSLKKAFLKSPLAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGV 384

Query: 394 IDFVGQQNGYGNIVVIKHWSGYSTAYGHMSRFAPKLKKGMKVSQNDVIGFVGMTGWATGP 453
           +DFVG+QNGYGNIVVIKHWSGYSTAYGHMSRFAP +KKGMKVSQNDVIGFVGMTGWATGP
Sbjct: 385 VDFVGKQNGYGNIVVIKHWSGYSTAYGHMSRFAPDIKKGMKVSQNDVIGFVGMTGWATGP 444

Query: 454 HLHYEFRVNNQPRNPLSVDVPNNQALTGPQLQRFRAVAADMQHRMAMLRVPGAPDVKLAA 513
           HLHYEFRVNNQPRNPLSVDVPNNQALTGPQLQRFR VAADMQHRMAMLRVPGAPDVKLA+
Sbjct: 445 HLHYEFRVNNQPRNPLSVDVPNNQALTGPQLQRFRTVAADMQHRMAMLRVPGAPDVKLAS 504

Query: 514 AK 515
            K
Sbjct: 505 VK 506


>gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 338 GKSLKKAFLKS--PLAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGVID 395
           G  +K   L +  P+     SS F  RL P  G    H G+DF AP GT I AAA GV+ 
Sbjct: 171 GDKIKSRLLPTNQPVNVAYNSSSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVI 230

Query: 396 FVGQQNGYGNIVVIKHWSGYSTAYGHMSRFAPKLKKGMKVSQNDVIGFVGMTGWATGPHL 455
                  +GN++ I H +   T Y H SR   K+   +K  Q+  +  VG TG +TG HL
Sbjct: 231 ASEYHYQFGNMLEIDHGNNIITRYAHASRLFVKVGDIVKRGQH--VADVGSTGRSTGAHL 288

Query: 456 HYEFRVNNQPRNP 468
           H+E R+    ++P
Sbjct: 289 HFEVRIRGIAQDP 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,656,613
Number of extensions: 71807
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 515
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,198,455
Effective search space: 510541830
Effective search space used: 510541830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)