BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0381.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309745|ref|YP_003773837.1| hypothetical protein Hsero_0404...   226   8e-61

>gi|300309745|ref|YP_003773837.1| hypothetical protein Hsero_0404
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  226 bits (575), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/156 (87%), Positives = 147/156 (94%), Gaps = 1/156 (0%)

Query: 1   MSIRHHYISLAIVSASFAGILIGCASPQQ-PYGAAPSSQDYERVASYSGTGVVEAIEVTH 59
           MS+RHHY SLAIVS SFAG+LIGCASPQQ PYGA P SQ+Y+RVASY+GTGVVEAIEVTH
Sbjct: 1   MSVRHHYASLAIVSLSFAGLLIGCASPQQQPYGAVPQSQNYDRVASYTGTGVVEAIEVTH 60

Query: 60  KESNGVAGAVVGGVAGGLLGNAVGGGTGRTLATVAGAAGGAYAGNQVQRNNSAGHQVYNI 119
           KESNGVAG VVGGVAGGL+GNA+GGGTGR LATVAGAAGGAYAGN++QRNNS G QVYNI
Sbjct: 61  KESNGVAGTVVGGVAGGLVGNAIGGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNI 120

Query: 120 RVRMNDGSLQTFAQEDNTDFRVGDRVRLDNGRISRY 155
           RVRM+DGS+QTFAQEDNTDFRVGDRVRLDNGRISRY
Sbjct: 121 RVRMDDGSMQTFAQEDNTDFRVGDRVRLDNGRISRY 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 348,830
Number of extensions: 10455
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 126 (53.1 bits)