BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0375.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309739|ref|YP_003773831.1| 4-hydroxybenzoate synthetase [H...   288   2e-79

>gi|300309739|ref|YP_003773831.1| 4-hydroxybenzoate synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  288 bits (736), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/190 (83%), Positives = 162/190 (85%)

Query: 1   MAHPQALAALRVADGDLMRRTRAWLADPGSMTLKLKARTETFTVRLLRQRPGRILADEHE 60
           MAHPQALA      G + RRTRAWL+DPGSMTLKLKART  FTVRLLRQRPG ILADEH 
Sbjct: 11  MAHPQALAGQLAEQGGVARRTRAWLSDPGSMTLKLKARTAHFTVRLLRQRPGPILADEHA 70

Query: 61  ALCISARSRVVERDVILLADGTPVVFGHTVLSTASVKSDWPFFSKLGTTPLGANLFFDPL 120
           AL + ARSRVVERDVIL  DG PVVFGHTVLSTASVKSDWPFFSKLG TPLGANLFFDPL
Sbjct: 71  ALGVPARSRVVERDVILHCDGQPVVFGHTVLSTASVKSDWPFFSKLGNTPLGANLFFDPL 130

Query: 121 VGRRPIQYARLSAGHPLMRRIAQALPGSELPTSLLARRSLFTRRGGVLMVTDVFLPALEA 180
           VGR PIQYARL+A HPLMRRI QALPG  LP SLLARRSLFTRRGGVLMVTDVFLPALE 
Sbjct: 131 VGRSPIQYARLAADHPLMRRIVQALPGLPLPPSLLARRSLFTRRGGVLMVTDVFLPALEP 190

Query: 181 LMRPVPAHVP 190
           LMR  PAH P
Sbjct: 191 LMRSRPAHAP 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 650,228
Number of extensions: 26135
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)