BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0371.p (551 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 779 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 540 e-154 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 514 e-147 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 491 e-140 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 488 e-139 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/570 (73%), Positives = 476/570 (83%), Gaps = 22/570 (3%) Query: 1 MNWFYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK 60 MNWFY+R+I TKLLLAFA +L+LT LG F+I+QL KVN AA ELATNWLPSIRSLNDMK Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 VALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSV 120 VALSRVRAN+AQ+ALY+ D + + + +MNKNL +LA ARK Y QISEPGEKAL+P V Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 121 KERIEKFISLHDQTLALLSAGQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQSV 180 RI+KFI+LH TLA + AG+ D+AK+LLLGPAF+NYL+LL +LDKLAQVNLDGSVQS Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 181 HIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEIS 240 AE TYDQ++ ++A+L+G+LL G LA+FIAR+I+ PLR+AG FA+ +AAGDLTA+I+ Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 241 ASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSL 300 A S DETGQL+ ALAAMN SLRRIVSQVRSGT+ IATAS QIS+GNLDLSSRTEEQASSL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 301 EETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIV 360 EETASAME+LTSTVRQNAENARQANQLAL+AS+IA+EGGKVV QVIETMG+IDASSKKIV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 361 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLID 420 DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIK+LID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 421 SSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDE 480 +SVQQVG+GS LVQ+AG T+++VV+SVQRVTDVM+EISAAS EQTQGIEQVN AITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 481 VTQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQATG---------------- 524 VTQQNAALVEEAASASQSLSHQ ++LSELVGVFRLPG A Q Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAYTPRR 540 Query: 525 ---AALAEVAPPAPGAIAGPANSDELWKTF 551 A A PA GP DE W+TF Sbjct: 541 PAVAGATSTATPALAVAQGP---DEQWETF 567 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 540 bits (1390), Expect = e-154, Method: Compositional matrix adjust. Identities = 301/515 (58%), Positives = 391/515 (75%), Gaps = 1/515 (0%) Query: 1 MNWFYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK 60 M WFY +I KL+ F ++ + A LG F+I QL +VN A+ E++TNWLPSIR+L ++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 VALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSV 120 +A+SR+R+ E Q L + D+ E + M +N+L A+ +Y QISEP EKA+YP V Sbjct: 61 LAMSRLRSFELQHILAK-DAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEV 119 Query: 121 KERIEKFISLHDQTLALLSAGQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQSV 180 ++ I F+S HD+ +AL G+ ++A+ L G + + Y L ++DKLA VN G+ S Sbjct: 120 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISN 179 Query: 181 HIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEIS 240 A+A Y Q+R II + + + LLAV+++R+I+ PL A + A +VA GDLT I Sbjct: 180 KQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 239 Query: 241 ASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSL 300 + +DETGQL AL +MN+SL IV QVR GT+TI TAS +I++GNLDLSSRTEEQASSL Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 301 EETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIV 360 EETASAME+LTSTV+QNA+NARQANQLA++AS +A +GG VV+QV++TMG+I+ASS+KI Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 361 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLID 420 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 421 SSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDE 480 SV QV +GS LV++AG TM++VV SV+RVTD++ EIS+AS EQ++GIEQVNLAI QMDE Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 481 VTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL 515 VTQQNAALVEEAA+A+QSL Q L++ VG F+L Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKL 514 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 293/516 (56%), Positives = 384/516 (74%), Gaps = 3/516 (0%) Query: 1 MNWFYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK 60 M WF + KI KL+++FA++++LT LG FAI +L VN A+ ++ATNWLP+I++ ++ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 VALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSV 120 +L R+R +E QM + ER + L+ LA R YE QISE EK LY Sbjct: 61 ASLPRMRISELQM-VTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKF 119 Query: 121 KERIEKFISLHDQTLALLSA-GQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQS 179 + ++ + D+ LA +SA G+ ++A+ L G + + + +++ +D++ +VN GS +S Sbjct: 120 SKSFATYLEI-DKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRS 178 Query: 180 VHIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEI 239 +AE Y + II LL +++ LAV +AR +S PL A A A +VA GDLT +I Sbjct: 179 DDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDI 238 Query: 240 SASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASS 299 A+S DETG L +L AMN+SL++IV +VR+GT+TI TAS +I+TGNLDLSSRTEEQA S Sbjct: 239 RATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGS 298 Query: 300 LEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKI 359 LEETASAME+LT+TV+QNA+NARQANQLA +AS IA +GG VV QV++TM I SS +I Sbjct: 299 LEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRI 358 Query: 360 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLI 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI Sbjct: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 418 Query: 420 DSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMD 479 D SV++VG GS LV++AGATM++VVASV+RVTDV+ EISAASNEQ+ GIE++N AITQMD Sbjct: 419 DDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMD 478 Query: 480 EVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL 515 EVTQQNAALVEEAA+A+QSL Q +LS++V VF+L Sbjct: 479 EVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 491 bits (1265), Expect = e-140, Method: Compositional matrix adjust. Identities = 284/515 (55%), Positives = 381/515 (73%) Query: 1 MNWFYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK 60 M WF + KI KL LAF ++L+L A LG F+I QL KV +A+ E++T+W+P+ + L D+K Sbjct: 1 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 60 Query: 61 VALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSV 120 + R+R E+Q+A+Y+ D + + L L KDYE + E+ LY V Sbjct: 61 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYTKV 120 Query: 121 KERIEKFISLHDQTLALLSAGQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQSV 180 +I +F++ H + +A A Q + L LG + + Y +LG+L+KL ++N DG + Sbjct: 121 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 180 Query: 181 HIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEIS 240 A+ T+ +SR G++ LL +L +G LA+++ARII+ PL+ A A +VA GDL A+I Sbjct: 181 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 240 Query: 241 ASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSL 300 S+DETGQL AL MNE LR++V QVRSGT++IATAS +I+TGNLDLS RTE+QA++L Sbjct: 241 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 300 Query: 301 EETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIV 360 EETASA+E+LTSTV+QN +NARQANQLA+ AS +A GG VV QV+ETM I+ +S +IV Sbjct: 301 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV 360 Query: 361 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLID 420 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LID Sbjct: 361 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 420 Query: 421 SSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDE 480 SV +VG G++LV+QAG+TM++VV SV+RVTDV++EISAAS EQ+ GI+++N A+TQMDE Sbjct: 421 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE 480 Query: 481 VTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL 515 VTQQNAALVEEAA+A+QS+ Q +L+ V VF+L Sbjct: 481 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 515 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 488 bits (1255), Expect = e-139, Method: Compositional matrix adjust. Identities = 274/515 (53%), Positives = 365/515 (70%), Gaps = 1/515 (0%) Query: 1 MNWFYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK 60 M WFY+ I KL L+FA ++ LT G FAI +L +VN A+GE+ + W+P++ + +++ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 VALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSV 120 +L +R NE ++ ER + L++L R +E+++SEP EK Y Sbjct: 61 GSLPPLRLNELELVTAVTPQ-ERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQF 119 Query: 121 KERIEKFISLHDQTLALLSAGQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQSV 180 + + ++ + +Q + + Q D+ + L G + + Y +++G LD + ++N GS Q+ Sbjct: 120 LKNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQAD 179 Query: 181 HIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEIS 240 A + ++ I+ LL ++L+ +LLA +A +S PL+ A A +VA GDLT I Sbjct: 180 EEASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIR 239 Query: 241 ASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSL 300 + RDETG L AL AMNESLR IVS+VR GT+TI TAS++I+ GNLDLS+RTE+QA SL Sbjct: 240 PAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSL 299 Query: 301 EETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIV 360 EETASAME+LTSTV QNA+NARQANQLA TAS IA +GG+VV QV++TM I SS++I Sbjct: 300 EETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIA 359 Query: 361 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLID 420 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LID Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELID 419 Query: 421 SSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDE 480 SVQ+V GS LV++AG+TM +VVASV+RVTDV+ EISAA+ EQ+ GI +VNLAITQMDE Sbjct: 420 DSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDE 479 Query: 481 VTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL 515 TQQNAALVE+AA+A+ SL Q L+ +VG F+L Sbjct: 480 TTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,177,255 Number of extensions: 38399 Number of successful extensions: 656 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 71 Length of query: 551 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 461 Effective length of database: 1,193,720 Effective search space: 550304920 Effective search space used: 550304920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)