BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0369.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309733|ref|YP_003773825.1| hypothetical protein Hsero_0392...   374   e-105

>gi|300309733|ref|YP_003773825.1| hypothetical protein Hsero_0392
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  374 bits (961), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/214 (92%), Positives = 205/214 (95%), Gaps = 2/214 (0%)

Query: 2   MSPMSEFEFTSPTEQLRAEIAAAAARMIAEDGADYGSAKRKAAKQILGNQKVRGEIMPDN 61
           M PMSEF  TSPTEQLRAEIAAAAARMIAEDGADYGSAKRKAA+QILGNQKVRGEIMPDN
Sbjct: 1   MWPMSEF--TSPTEQLRAEIAAAAARMIAEDGADYGSAKRKAARQILGNQKVRGEIMPDN 58

Query: 62  EQIEDEVRIYNELFFADTQPARLLHLRQVALQLMQDLQQFNPYITGAVWNGTAGEHSDIH 121
           EQIE+EVR+YNELFFADTQPARLLHLRQVALQ+MQDLQ FNPYITGAVWNGTAGEHSDIH
Sbjct: 59  EQIEEEVRVYNELFFADTQPARLLHLRQVALQVMQDLQAFNPYITGAVWNGTAGEHSDIH 118

Query: 122 LQLFSPSAKDVEIFLLNKNVNFEVGETAHFRTGHPVETLSFLLPQRGADPELAHLTLYEE 181
           LQLFSPSAKDVEIFLLNKNVNFEVGETAHFRTG PVETLSFLLPQRGADPELAHL LYEE
Sbjct: 119 LQLFSPSAKDVEIFLLNKNVNFEVGETAHFRTGQPVETLSFLLPQRGADPELAHLALYEE 178

Query: 182 DDLRGSLRAAPGKRAERGDATALASLIDASSEEQ 215
           DDLRGSLRAAPGKRAERGDA ALA+LID + +E+
Sbjct: 179 DDLRGSLRAAPGKRAERGDANALAALIDETCKEE 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,077
Number of extensions: 23614
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)