BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0366.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309730|ref|YP_003773822.1| biotin carboxyl carrier protein...   228   2e-61
gi|300313398|ref|YP_003777490.1| biotin carboxyl carrier protein...    65   3e-12

>gi|300309730|ref|YP_003773822.1| biotin carboxyl carrier protein of
           acetyl-CoA carboxylase (BCCP)protein [Herbaspirillum
           seropedicae SmR1]
          Length = 157

 Score =  228 bits (581), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 138/157 (87%), Gaps = 2/157 (1%)

Query: 1   MDLRKLKTLIDLVAESAIEELEVTEGESKVRIVKSSPNAQNQVVMVPQQQAYAPAAAPVA 60
           MDLRKLKTLIDLVAESAIEELEVTEGESKVRIVKSSPN QNQVVMVPQQQAYAPAAA  +
Sbjct: 1   MDLRKLKTLIDLVAESAIEELEVTEGESKVRIVKSSPNTQNQVVMVPQQQAYAPAAAAPS 60

Query: 61  APAAAPVAAAPAAPAVP--EGHIVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIE 118
              A   A A A  A    EG+IVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIE
Sbjct: 61  PTLAPVAAPAAAPAAAAVPEGYIVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIE 120

Query: 119 AMKLLNEIDADKGGVVKQILVENGQAVEFGQPLFVLG 155
           AMKLLNEID DKGGVVKQILVENGQ VEFGQPLFVLG
Sbjct: 121 AMKLLNEIDTDKGGVVKQILVENGQPVEFGQPLFVLG 157


>gi|300313398|ref|YP_003777490.1| biotin carboxyl carrier protein
           [Herbaspirillum seropedicae SmR1]
          Length = 82

 Score = 64.7 bits (156), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query: 80  HIVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIEAMKLLNEIDADKGGVVKQILV 139
           H V+SP+ GTFYR S+P AP + E G+ ++ G  + +IE MK   E+ A+ GG ++   V
Sbjct: 4   HEVQSPLPGTFYRRSSPDAPPYAEAGELIEAGRVIGLIEVMKQFTELQAEHGGKLQAFHV 63

Query: 140 ENGQAVEFGQ 149
            NG  VE GQ
Sbjct: 64  GNGDPVEPGQ 73


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 352,097
Number of extensions: 10337
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 3
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)