BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0364.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309728|ref|YP_003773820.1| 50S ribosomal protein L11 methy...   579   e-167

>gi|300309728|ref|YP_003773820.1| 50S ribosomal protein L11
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  579 bits (1493), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/304 (94%), Positives = 296/304 (97%)

Query: 1   MAWVEIVIEVAREEAEALSDALMDSGALSVSVEDADEGTEAERPLFGEPGMEPEEAAWDR 60
           MAWVEIVIEVAREEAEALSDALM+SGALSVSVEDADEGT+AERPLFGEPGMEPEEAAWDR
Sbjct: 1   MAWVEIVIEVAREEAEALSDALMESGALSVSVEDADEGTDAERPLFGEPGMEPEEAAWDR 60

Query: 61  SRVVALAGKDADHAAIVMDAAKAIGLDYALPFATRNVEEQDWVRLTQSQFEPIHIGQRIW 120
           SRVVALAGKDADHA IVMDAAKAIGLDYALPF+TR VEEQDWVRLTQSQFEPIHIG+RIW
Sbjct: 61  SRVVALAGKDADHATIVMDAAKAIGLDYALPFSTRVVEEQDWVRLTQSQFEPIHIGKRIW 120

Query: 121 VVPSWHEAPADPDALVLELDPGLAFGTGSHPTTRLCMEWLEANATQAQTLLDYGCGSGIL 180
           VVPSWHEAPADPDALVLELDPGLAFGTGSHPTTRLCMEWLEANAT+A TLLDYGCGSGIL
Sbjct: 121 VVPSWHEAPADPDALVLELDPGLAFGTGSHPTTRLCMEWLEANATEAGTLLDYGCGSGIL 180

Query: 181 ALVAAKIGVPQVIGVDIDPQALESAQHNTERNHCTATYYLPEAFAQAHPEGERFNVVVAN 240
           ALVAAKIGVPQVIGVDIDPQALE+A HNTERNHCTATYYLPE FAQAHPEGERF+VVVAN
Sbjct: 181 ALVAAKIGVPQVIGVDIDPQALEAAHHNTERNHCTATYYLPEPFAQAHPEGERFDVVVAN 240

Query: 241 ILAGPLQLMAPMLAGRVRAGGALVLSGVLDRQAQEVIATYAPYIALTVWAEHEGWVALAG 300
           ILAGPLQLMAPMLAGRVRAGG+LVLSGVL+RQAQEVIATYAPYIAL VWA HEGWVALAG
Sbjct: 241 ILAGPLQLMAPMLAGRVRAGGSLVLSGVLERQAQEVIATYAPYIALNVWAAHEGWVALAG 300

Query: 301 HLPE 304
            LPE
Sbjct: 301 RLPE 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,046,589
Number of extensions: 46499
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)