BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0362.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309726|ref|YP_003773818.1| sugar kinase ribokinase family ...   595   e-171

>gi|300309726|ref|YP_003773818.1| sugar kinase ribokinase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  595 bits (1535), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/310 (91%), Positives = 294/310 (94%)

Query: 13  MSSLICGSLAYDNIMQYEGRFAEALLADQLHKVNVSFLVPTMRREFGGCAGNIAYNLKLL 72
           MSSLICGSLAYDNIMQYEGRFAEALLADQLHKVNVSFLVPTMRREFGGCAGNIAYNLKLL
Sbjct: 1   MSSLICGSLAYDNIMQYEGRFAEALLADQLHKVNVSFLVPTMRREFGGCAGNIAYNLKLL 60

Query: 73  GGQPIVMATVGLDSAPYMERLAALEISTRCVRQIESSFTAQCFITTDADSNQITAFHPGA 132
           GG P++MATVGLDSAPY+ER A L ISTRCVRQI+SSFTAQCFITTDADSNQITAFHPGA
Sbjct: 61  GGDPVIMATVGLDSAPYLERFAELGISTRCVRQIDSSFTAQCFITTDADSNQITAFHPGA 120

Query: 133 MTWSHENKVADAGTVKFAIVAPDGRDGMLQHAQQAAELNIPLIFDPGQGMPMFDGKDLTN 192
           MTWSHENKVADAG VKFAIVAPDGRDGMLQHAQQAAELNIPLIFDPGQGMPMFDG+DL N
Sbjct: 121 MTWSHENKVADAGPVKFAIVAPDGRDGMLQHAQQAAELNIPLIFDPGQGMPMFDGEDLKN 180

Query: 193 FIDLATYVAVNDYEAELLTARTGLSLAQIAERVTALVVTRGELGADIFVGGKHHAIPCVP 252
           FIDLATYVAVNDYEAELLTARTGLSLAQIAER  AL+VTRGELGADIF GGK   IPCVP
Sbjct: 181 FIDLATYVAVNDYEAELLTARTGLSLAQIAERTKALIVTRGELGADIFEGGKKFDIPCVP 240

Query: 253 AAKIADPTGCGDAFRAGMLHGLTESYDWETTGRLASLMGSIKIASQGPQNHAPTKAEIEE 312
           A +IADPTGCGDAFRAGML GLTE YDWETTGRLASLMGS+KIASQGPQNHAP++AEIEE
Sbjct: 241 ADRIADPTGCGDAFRAGMLFGLTEGYDWETTGRLASLMGSLKIASQGPQNHAPSRAEIEE 300

Query: 313 RFHQAFGYRF 322
           RFH AFGYRF
Sbjct: 301 RFHAAFGYRF 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,033,139
Number of extensions: 43692
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)