BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0357.p
         (993 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large ...  1991   0.0  

>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score = 1991 bits (5158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 963/994 (96%), Positives = 975/994 (98%), Gaps = 1/994 (0%)

Query: 1   VRSTQEISVKSPAPFGVSAEQEGSAEGQSIVSHTAGLGEYRIIRRNGAVVGFEPSKISIA 60
           +RSTQEISVKSPA +GVSAE EGSAE Q++ S TAGLGEYRIIRRNGAVVGFEPSKISIA
Sbjct: 1   MRSTQEISVKSPAAYGVSAELEGSAESQAVASQTAGLGEYRIIRRNGAVVGFEPSKISIA 60

Query: 61  VTKAFLAVNGGQGAASARVREMVEQLTTSVVSALVRRQPTGGTFHIEDIQDQVELALMRS 120
           VTKAFLAVNGGQGAASARVREMVEQLTT+VVSALVRRQPTGGTFHIEDIQDQVELALMRS
Sbjct: 61  VTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRRQPTGGTFHIEDIQDQVELALMRS 120

Query: 121 GEHDVARAYVLYRAKRMEERAQQGAATKTEVAAPQLHVTEDGQSRPLDINEVRALIAAAC 180
           GEHDVARAYVLYRAKRMEERAQQGAATKTEV APQLHVTEDGQSRPLDINEVR+LIAAAC
Sbjct: 121 GEHDVARAYVLYRAKRMEERAQQGAATKTEVVAPQLHVTEDGQSRPLDINEVRSLIAAAC 180

Query: 181 VGLEAHVDAEAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIR 240
           VGLE HVD EAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIR
Sbjct: 181 VGLEEHVDGEAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIR 240

Query: 241 KEVFGKEVAQADAPAEYLDYFPHYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGY 300
           KEVFGKEVAQADAPAEYL+YFP YVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGY
Sbjct: 241 KEVFGKEVAQADAPAEYLEYFPQYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGY 300

Query: 301 IGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDREARAIEFYDLLSSFDFMSST 360
           IGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDRE RAIEFYDLLSSFDFMSST
Sbjct: 301 IGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDRETRAIEFYDLLSSFDFMSST 360

Query: 361 PTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIK 420
           PTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIK
Sbjct: 361 PTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIK 420

Query: 421 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRR 480
           GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRR
Sbjct: 421 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRR 480

Query: 481 THDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELK 540
           THDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELK
Sbjct: 481 THDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELK 540

Query: 541 LFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNES 600
           LFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+S
Sbjct: 541 LFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDS 600

Query: 601 EIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRP 660
           EIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRP
Sbjct: 601 EIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRP 660

Query: 661 VGMGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSL 720
           VGMGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSL
Sbjct: 661 VGMGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSL 720

Query: 721 WDRGILPQDSLKLLAQERGGYLETDTTETLDWAALRARIAEHGMRNSNCVAIAPTATISN 780
           WDRGILPQDSLKLLAQERGGYLETD+TETLDWAALRARIAEHGMRNSNCVAIAPTATISN
Sbjct: 721 WDRGILPQDSLKLLAQERGGYLETDSTETLDWAALRARIAEHGMRNSNCVAIAPTATISN 780

Query: 781 IIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKI 840
           IIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKI
Sbjct: 781 IIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKI 840

Query: 841 DRIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWL 900
           DRIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWL
Sbjct: 841 DRIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWL 900

Query: 901 RGLKTTYYLRTIGATHTEKSTSRAGALNAVAVDGGAGAMASASGT-AVPAAPIASAAASA 959
           RGLKTTYYLRTIGATHTEKSTSRAGALNAVAVDGGAGAMASASGT    A   ++A ASA
Sbjct: 901 RGLKTTYYLRTIGATHTEKSTSRAGALNAVAVDGGAGAMASASGTAVPAAPIASAATASA 960

Query: 960 AYVMPNPGASIEADGPVCTMRPGDPGFEECEACQ 993
           AYVMPNPGA+IEADGPVCTMRPGD GFEECEACQ
Sbjct: 961 AYVMPNPGAAIEADGPVCTMRPGDAGFEECEACQ 994


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,898,881
Number of extensions: 116192
Number of successful extensions: 330
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 1
Length of query: 993
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 898
Effective length of database: 1,170,045
Effective search space: 1050700410
Effective search space used: 1050700410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)