BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0353.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 523 e-150 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 220 1e-58 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 215 4e-57 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 209 2e-55 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 201 4e-53 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 523 bits (1348), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/269 (94%), Positives = 261/269 (97%) Query: 1 MNPSNSSPRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIA 60 MN +N+SPRI IQ VHKVFKTD+REVVALKDINL IPDGQFVCLLGPSGCGKSTLLNAIA Sbjct: 1 MNQTNASPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIA 60 Query: 61 GFALPSSGQILTDGKAVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQR 120 GFALPSSGQILTD K V+EPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKG PKAEI QR Sbjct: 61 GFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQR 120 Query: 121 VSQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ 180 V+QLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ Sbjct: 121 VTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ 180 Query: 181 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDF 240 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADP+F Sbjct: 181 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEF 240 Query: 241 NALKRELGQLVMEEQQRHHNAEMKAAAVD 269 NALKRELGQLVMEEQQRHHNAEMKAAAVD Sbjct: 241 NALKRELGQLVMEEQQRHHNAEMKAAAVD 269 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 148/222 (66%), Gaps = 2/222 (0%) Query: 6 SSPRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 S P + I V +KT + V A + ++ + G LLGPSGCGKSTLL AI G+ P Sbjct: 14 SRPLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQP 73 Query: 66 SSGQILTDGKAVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGRPKAEIA-QRVSQ 123 +SG I G+ V EPGPDR MVFQE+ L PW TV QNV F L GR + A +R Sbjct: 74 TSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAEY 133 Query: 124 LLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDEL 183 + K+GL F +P LSGGM+QRV+IAR +A++ ++LMDEPF ALDALTRR +QDEL Sbjct: 134 YISKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDEL 193 Query: 184 LRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 LR+WD+ + T++FVTHSIEEAI + RI+++T PG V+ ++ Sbjct: 194 LRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 215 bits (547), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 145/217 (66%), Gaps = 3/217 (1%) Query: 29 LKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDGKAVTEPGPDRGMVF 88 + I+L I G+FVCLLGPSGCGKSTLLNAIAGF SG+I DGK V PG DRG+VF Sbjct: 22 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQ-DVSGEISVDGKRVKGPGLDRGVVF 80 Query: 89 QEY-ALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Q ALFPW++V +NV +GL+++G AE + + +GL +FP +LSGGMRQ Sbjct: 81 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 R IARVL + ++LMDEPFGALDA TR LQ EL RIW TIVFVTH I EAI L Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 208 ADRIVVMTYRP-GTVKRDMLVNLPRLRDPADPDFNAL 243 ADR+V MT P +K V+LP RDPADP AL Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMAL 237 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 209 bits (533), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 157/243 (64%), Gaps = 3/243 (1%) Query: 22 DEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDGKAVTEPG 81 D++ V AL ++L IP+G FV LG SGCGKSTLLNA+AGF S G+I DG+ V+ PG Sbjct: 15 DKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPG 74 Query: 82 PDRGMVFQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDKLGLIDFRTRFPKDL 141 +RG+VFQ+ +L PW +V+ NVA GL+ G K++ +R +LL +GL DF P +L Sbjct: 75 AERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYEL 134 Query: 142 SGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSI 201 SGGMRQRV +AR LA + I+LMDEPFGALD++TR +Q+ L+ +W K + F+THSI Sbjct: 135 SGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSI 194 Query: 202 EEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDFNALKRELGQLVMEEQQRH--H 259 EEA++L ++VM+ RPG + + R R A + A+K E + E+ R H Sbjct: 195 EEALFLGTEVIVMSPRPGRIVARFETDFVR-RFAAGCEARAIKTEPAFAELREEIRAIVH 253 Query: 260 NAE 262 +E Sbjct: 254 QSE 256 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 201 bits (512), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 148/221 (66%), Gaps = 2/221 (0%) Query: 7 SPRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPS 66 +P + + V +++ V A +++ + LLGPSGCGKS+LL ++AGF P+ Sbjct: 18 APLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPA 77 Query: 67 SGQILTDGKAVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGL-EIKGRPKAEIAQRVSQL 124 +G+I DG+ + +PGPDR +VFQE+ L PW TV QNV F L + K + A+R Sbjct: 78 AGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHY 137 Query: 125 LDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELL 184 LDK+GL F +P LSGGM+ RVAIAR LA+ ++LMDEPF ALDALTRR +Q+ELL Sbjct: 138 LDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELL 197 Query: 185 RIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 +WDE R T++FVTHSIEEA+ + +RI++++ PG V+ ++ Sbjct: 198 ALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 853,031 Number of extensions: 35910 Number of successful extensions: 507 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 138 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)