BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0349.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309713|ref|YP_003773805.1| hypothetical protein Hsero_0372...   176   8e-46

>gi|300309713|ref|YP_003773805.1| hypothetical protein Hsero_0372
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score =  176 bits (446), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 82/83 (98%), Positives = 83/83 (100%)

Query: 84  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLK 143
           RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKK+KLQNAENKRNIDADDKLK
Sbjct: 93  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDKLK 152

Query: 144 AIFGGKKQVTMFEMTKLISAHLS 166
           AIFGGKKQVTMFEMTKLISAHLS
Sbjct: 153 AIFGGKKQVTMFEMTKLISAHLS 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.117    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 243,667
Number of extensions: 7327
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 127 (53.5 bits)