BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0344.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309708|ref|YP_003773800.1| gamma-glutamyl kinase [Herbaspi...   701   0.0  

>gi|300309708|ref|YP_003773800.1| gamma-glutamyl kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/372 (97%), Positives = 368/372 (98%)

Query: 1   MQSVIQRAKRLIIKVGSSLVTNDGKGLDANAIARWAEQIAQLRALGKEVVLVSSGAVAEG 60
           MQSVIQRAKRLIIKVGSSLVTNDGKGLDANAIARWAEQIAQLRALGKEVVLVSSGAVAEG
Sbjct: 1   MQSVIQRAKRLIIKVGSSLVTNDGKGLDANAIARWAEQIAQLRALGKEVVLVSSGAVAEG 60

Query: 61  MQRLGFDKRPTGIHHLQACAAVGQMGLAQIYETSFRKHELHTAQVLLTHADLADRERYLN 120
           MQRLGF+KRPTGIHHLQACAAVGQMGLAQIYETSFRKH+LHTAQVLLTHADLADRERYLN
Sbjct: 61  MQRLGFEKRPTGIHHLQACAAVGQMGLAQIYETSFRKHDLHTAQVLLTHADLADRERYLN 120

Query: 121 ARSTLFALLQLGVVPVINENDTVVTDEIKFGDNDTLGALVANLIEADALIILTDQPGLFT 180
           ARSTLFALLQLGVVPVINENDTVVTDEIKFGDNDTLGALVANLIEA+ALIILTDQPGLFT
Sbjct: 121 ARSTLFALLQLGVVPVINENDTVVTDEIKFGDNDTLGALVANLIEAEALIILTDQPGLFT 180

Query: 181 ADPRKDPHATLIAEARAGDPSLELIAGGTGTGIGRGGMLTKILAAKRAATSGAHTVIAWG 240
           ADPRKDP ATLI+EARAGDPSLELIAGGTGTGIGRGGMLTKILAAKRAATSGAHTVIAWG
Sbjct: 181 ADPRKDPTATLISEARAGDPSLELIAGGTGTGIGRGGMLTKILAAKRAATSGAHTVIAWG 240

Query: 241 REDQVLTRLAAGEAIGTQLNAETAQLTARKQWMADHLKTAGRVVLDAGAVQKLSQEGKSL 300
           RE+QVLTRLAAGEAIGTQLNAETAQLTARKQWMADHLKTAGRVVLDAGAVQKLS EGKSL
Sbjct: 241 REEQVLTRLAAGEAIGTQLNAETAQLTARKQWMADHLKTAGRVVLDAGAVQKLSLEGKSL 300

Query: 301 LPIGVVEVAGEFGRGDVITCVDAAGRAIARGMSNYNSSDARRIIRHPSSEIQAILGFVEE 360
           LPIGVVEV+GEFGRGDVITCVD  GRAIARGMSNYNSSDARRIIRHPSSEIQAILGFVEE
Sbjct: 301 LPIGVVEVSGEFGRGDVITCVDENGRAIARGMSNYNSSDARRIIRHPSSEIQAILGFVEE 360

Query: 361 PELVHRDNLVLL 372
           PELVHRDNLVLL
Sbjct: 361 PELVHRDNLVLL 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,107,043
Number of extensions: 45210
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)