BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0332.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309702|ref|YP_003773794.1| translation initiation factor I...   176   4e-46
gi|300309477|ref|YP_003773569.1| translation initiation factor I...    93   4e-21

>gi|300309702|ref|YP_003773794.1| translation initiation factor
          IF-1 protein [Herbaspirillum seropedicae SmR1]
          Length = 87

 Score =  176 bits (445), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/87 (97%), Positives = 86/87 (98%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY
Sbjct: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60

Query: 61 DLNKGRIIFRHLEQRGPSGPRPGFRRR 87
          DLNKGRIIFRHLE RGP+GPRPGFRRR
Sbjct: 61 DLNKGRIIFRHLENRGPTGPRPGFRRR 87


>gi|300309477|ref|YP_003773569.1| translation initiation factor
          IF-1 [Herbaspirillum seropedicae SmR1]
          Length = 72

 Score = 93.2 bits (230), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 60/70 (85%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAK+++I+MQG++ E LP++ FRV L+NGH ++ + +G+M+ N+I+IL GDKVT+EL+PY
Sbjct: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 61 DLNKGRIIFR 70
          DL++ RI+FR
Sbjct: 61 DLSRARIVFR 70


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 208,681
Number of extensions: 6270
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)