BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0328.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309697|ref|YP_003773789.1| bifunctional leader peptidase/N...   380   e-107

>gi|300309697|ref|YP_003773789.1| bifunctional leader
           peptidase/N-methyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  380 bits (976), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/287 (79%), Positives = 249/287 (86%)

Query: 1   MPFLEAYAVSGSPVLSGVAALLGLLVGSFLNVVIHRLPAMMLRESANFVAHERGEALPHT 60
           MPFLEAYA+ G P+L  +AALLGLLVGSFLNV+IHRLP MMLRESANFVA ERGE  PH 
Sbjct: 1   MPFLEAYALPGDPILCALAALLGLLVGSFLNVLIHRLPIMMLRESANFVAQERGETPPHQ 60

Query: 61  ERYNLWLPHSACPHCATPLALHHKLPVLSWLLLRGRCAYCSAPISLRYPLVELLCAVLFA 120
           +RY+LWLP SACPHCATPL   HKLPVLSWLLLRGRC +C A I LRYPLVELL A LFA
Sbjct: 61  DRYDLWLPSSACPHCATPLPWRHKLPVLSWLLLRGRCGHCQAAIGLRYPLVELLTAALFA 120

Query: 121 LLAWRYGLGLTGLALMTGAAFLVALAFIDAQTMLLPDDLTLPLLWLGLLVNLTHRLVPLQ 180
             AWR+GLG+TGLA+M   A LVALAFIDAQTMLLPDDLTLPL+WLGLLVNLTHRLVPLQ
Sbjct: 121 FAAWRFGLGVTGLAVMACTATLVALAFIDAQTMLLPDDLTLPLMWLGLLVNLTHRLVPLQ 180

Query: 181 DAVLGAMAGYGVLWLIFWCFKLTTGKEGLGYGDFKLMAALGAWLGWQALPLVLLLASALG 240
           DAVLGA AGYGVLWLIFW FKL TGK+GLGYGDFKLMAALGAWLGWQALP++LLLASA+G
Sbjct: 181 DAVLGAAAGYGVLWLIFWLFKLITGKDGLGYGDFKLMAALGAWLGWQALPVILLLASAMG 240

Query: 241 AVLGLALMLGGRHQRGQAIPFGPCLALAGMLALVLGHDWLNLILYAF 287
           AVLG+ LM  GRH+RGQAIPFGPCLA AG+LAL+ G DWL   LY +
Sbjct: 241 AVLGVVLMAAGRHRRGQAIPFGPCLASAGLLALLQGLDWLWRGLYDY 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.144    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 657,717
Number of extensions: 20806
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)