BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0323.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309692|ref|YP_003773784.1| AAA+ superfamily ATPase [Herbas...   583   e-168

>gi|300309692|ref|YP_003773784.1| AAA+ superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score =  583 bits (1502), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/290 (96%), Positives = 285/290 (98%)

Query: 1   MTQLDQFLQRAEALLARVEAILPQAATREPDWNAAVAFRWRGATAQRPGYLQAVGHISQI 60
           MTQLDQFLQRAEALLARVEAILPQAA REPDWNAAVAFRWRGATAQRPGYLQAVGHISQI
Sbjct: 1   MTQLDQFLQRAEALLARVEAILPQAAAREPDWNAAVAFRWRGATAQRPGYLQAVGHISQI 60

Query: 61  ALSDLHNIGPQKEQIDQNTRQFVAGRPANNVLLTGARGTGKSSLIKACLNQYADQGLRLI 120
            LSDLHNIGPQKEQIDQNTRQFV GRPANNVLLTGARGTGKSSLIKACLNQYAD+GLRLI
Sbjct: 61  GLSDLHNIGPQKEQIDQNTRQFVEGRPANNVLLTGARGTGKSSLIKACLNQYADRGLRLI 120

Query: 121 EVDKDDLHDLQDIVELVATRPERFIVFCDDLSFEEGEGGYKALKVALDGSIAAQSDNVLI 180
           EVDKDDLHDLQDIVELVA RPERFIVFCDDLSFEEGEGGYKALKVALDGSIAAQSDNVLI
Sbjct: 121 EVDKDDLHDLQDIVELVAARPERFIVFCDDLSFEEGEGGYKALKVALDGSIAAQSDNVLI 180

Query: 181 YATSNRRHLMPERLSDNSTYTHTEDGDLHPGETVEEKISLSERFGLWVTFYPFKQDDFLD 240
           YATSNRRHLMPERLSDNSTYTHTEDGDLHPGETVEEKISLSERFGLWVTFYPFKQDDFL+
Sbjct: 181 YATSNRRHLMPERLSDNSTYTHTEDGDLHPGETVEEKISLSERFGLWVTFYPFKQDDFLE 240

Query: 241 IVAHWLRHFGCTDAQIAEARADALRWALQRSSRSGRVAWQFARDYAGRAK 290
           IVAHWLRHFGC DAQIAEARADALRWALQRSSRSGRVAWQFARDYAG+A+
Sbjct: 241 IVAHWLRHFGCNDAQIAEARADALRWALQRSSRSGRVAWQFARDYAGKAQ 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 939,874
Number of extensions: 38965
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)