BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0322.p
         (411 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309691|ref|YP_003773783.1| N-acetylglutamate synthase [Her...   822   0.0  

>gi|300309691|ref|YP_003773783.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/411 (97%), Positives = 405/411 (98%)

Query: 1   MAVNSPIPVSSDLKAVAGIELGHAEAGVRKANRKDVLVMKLAETATVAGVFTKNRFCAAP 60
           MAVNSPIPV SDLKAVAGIELGHAEAGVRKANRKDVLVMKLAETATVAGVFTKNRFCAAP
Sbjct: 1   MAVNSPIPVPSDLKAVAGIELGHAEAGVRKANRKDVLVMKLAETATVAGVFTKNRFCAAP 60

Query: 61  VQICQANLAQLSADKPIRALVINTGNANAGTGEEGLQRAKSVCAALAEQMGLEPQQILPF 120
           VQICQANLAQLSA KPIRALVINTGNANAGTGEEGLQRAKSVCAALA+QMG+E QQILPF
Sbjct: 61  VQICQANLAQLSAGKPIRALVINTGNANAGTGEEGLQRAKSVCAALAQQMGVEAQQILPF 120

Query: 121 STGVILEPLPADRIIAGLPQAIANLKADNWFNAAESIMTTDTQPKAASRTLTIAGKQVVM 180
           STGVILEPLPADRIIAGLPQAI NLKADNWFNAAESIMTTDTQPKAASRTLTI GKQVVM
Sbjct: 121 STGVILEPLPADRIIAGLPQAIGNLKADNWFNAAESIMTTDTQPKAASRTLTIGGKQVVM 180

Query: 181 TGISKGAGMIKPNMATMLGFLAFDAKLPQALLNRLVKDAADDSFNCITIDGDTSTNDSFI 240
           TGISKGAGMIKPNMATMLGFLAFDAKLPQALLN+LVKDAAD SFNCITIDGDTSTNDSFI
Sbjct: 181 TGISKGAGMIKPNMATMLGFLAFDAKLPQALLNQLVKDAADHSFNCITIDGDTSTNDSFI 240

Query: 241 LMATGAGELEITSADSEEYQQLAAAVTDLSQHLAHQIVRDGEGATKFIEVAVEDGKSVEE 300
           LMATGAGELEITSADSEEYQQLAAAVTDLSQHLAHQIVRDGEGATKFIEVAVEDGKSVEE
Sbjct: 241 LMATGAGELEITSADSEEYQQLAAAVTDLSQHLAHQIVRDGEGATKFIEVAVEDGKSVEE 300

Query: 301 CRQIAYSIGHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVSKINLWLDDVWVAKDGGR 360
           CRQIAYSIGHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVSKINLWLDDVWVAKDGGR
Sbjct: 301 CRQIAYSIGHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVSKINLWLDDVWVAKDGGR 360

Query: 361 NPDYREEDGQRVMKKAEIVVRVKLARGSAKASIWTCDLSHDYVSINADYRS 411
           NPDYREEDGQRVMKKAEIVVRVKLARG+AKASIWTCDLSHDYVSINADYRS
Sbjct: 361 NPDYREEDGQRVMKKAEIVVRVKLARGAAKASIWTCDLSHDYVSINADYRS 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,260,564
Number of extensions: 51956
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 323
Effective length of database: 1,203,190
Effective search space: 388630370
Effective search space used: 388630370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)