BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0321.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309689|ref|YP_003773781.1| transmembrane protein [Herbaspi...   472   e-134

>gi|300309689|ref|YP_003773781.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  472 bits (1214), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/244 (92%), Positives = 238/244 (97%)

Query: 23  GCASSPLPQWRDNANAGYAPVTPSIPVTDTAVPAVAISTAPPTRAALVEAAKAEWDFFGN 82
           GCASSPLPQWRD+ NAGYAPVTPSIPVT+TAVPAVAISTAPPTRAALV+AAKAEWDFFGN
Sbjct: 32  GCASSPLPQWRDSDNAGYAPVTPSIPVTNTAVPAVAISTAPPTRAALVDAAKAEWDFFGN 91

Query: 83  QQIDMRHEPFSAPRLGLLEDEGEAVQRVAEYWHAVGKNLTGADCEQAWSAAFISWLMVST 142
           QQIDMRHEPFSAPRLGLLEDEGEAVQRVAEYWHAVGKNLTGADC+QAWSAAFISWLMV+T
Sbjct: 92  QQIDMRHEPFSAPRLGLLEDEGEAVQRVAEYWHAVGKNLTGADCQQAWSAAFISWLMVTT 151

Query: 143 NVPPQDFAPSETHFNYLSFLKERQSRPSPQFVLRPAETESIAPGDLICAPRGNNNITSID 202
           NVPPQDFAP+ETHFNYLSFLK+R+SRPSPQF+LRPA++E IA GDLICAPRGNNNITSID
Sbjct: 152 NVPPQDFAPNETHFNYLSFLKDRESRPSPQFLLRPADSEPIAAGDLICAPRGNNNITSID 211

Query: 203 EIRPGLAGHCDLVVEVHADDGWAGVIGGNVFNSVSESLIPVDSGGRAQPIAQRPWLVVVK 262
           EIRPGLAGHCD+VVEVHADDGWAGVIGGNVFNSVSESLIPVD  GRAQPIA RPWLVVVK
Sbjct: 212 EIRPGLAGHCDVVVEVHADDGWAGVIGGNVFNSVSESLIPVDGQGRAQPIAARPWLVVVK 271

Query: 263 NLLP 266
           NLLP
Sbjct: 272 NLLP 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 847,449
Number of extensions: 36014
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)