BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0320.p
         (917 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309688|ref|YP_003773780.1| preprotein translocase SecA sub...  1859   0.0  

>gi|300309688|ref|YP_003773780.1| preprotein translocase SecA
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 918

 Score = 1859 bits (4815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/918 (97%), Positives = 910/918 (99%), Gaps = 1/918 (0%)

Query: 1   MSFLTKIFGSRNQRLLKQYQKIVRQINALEPSVEKLTDAELQAKTPEFKQRIAGGETLDA 60
           MSFLTKIFGSRNQRLLKQYQKIVRQINALEP+VEKLTDAELQAKTPEFKQRIAGGETLDA
Sbjct: 1   MSFLTKIFGSRNQRLLKQYQKIVRQINALEPTVEKLTDAELQAKTPEFKQRIAGGETLDA 60

Query: 61  ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA 120
           ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA
Sbjct: 61  ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA 120

Query: 121 GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF 180
           GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF
Sbjct: 121 GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF 180

Query: 181 GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAV 240
           GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAV
Sbjct: 181 GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAV 240

Query: 241 PPLLTLQIGEETPDGKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASL 300
           PPLLT QIGEETPDGKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASL
Sbjct: 241 PPLLTQQIGEETPDGKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASL 300

Query: 301 YDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360
           YDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE
Sbjct: 301 YDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360

Query: 361 AKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPN 420
           AKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPN
Sbjct: 361 AKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPN 420

Query: 421 ARKDRQDQVYKTAQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILTKSKLPHNV 480
           ARKDRQDQVYKTAQEKYMAM+KDIQDCYERGQPVLVGTTSIENSELLSGILTK+KLPHNV
Sbjct: 421 ARKDRQDQVYKTAQEKYMAMLKDIQDCYERGQPVLVGTTSIENSELLSGILTKAKLPHNV 480

Query: 481 LNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADDSLSDADKA 540
           LNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEAD+SLSDADKA
Sbjct: 481 LNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADESLSDADKA 540

Query: 541 AKSQQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600
           AK+QQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD
Sbjct: 541 AKAQQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600

Query: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDV 660
           DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDV
Sbjct: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDV 660

Query: 661 ANDQRKVIYQQRNELLESVDMAEMIASLRDGVFTDLFRQHVPAESMEEQWDIPGLQAALK 720
           ANDQRKVIYQQRNELLES +MAEMIASLRDGVFTDLFR++VPAESMEEQWDIPGLQA LK
Sbjct: 661 ANDQRKVIYQQRNELLESAEMAEMIASLRDGVFTDLFREYVPAESMEEQWDIPGLQAVLK 720

Query: 721 NEWQLDVDLDATLKAEPDMADDELLEHLLKAAKEAYDAKVAVVGVEAFAGFERSVMLQAI 780
           NEWQLDV LDATLKAEPDMADDELL HLLKAAK+AYDAKVAVVGVEAFAGFERSVMLQ+I
Sbjct: 721 NEWQLDVYLDATLKAEPDMADDELLAHLLKAAKDAYDAKVAVVGVEAFAGFERSVMLQSI 780

Query: 781 DNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRI 840
           DNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRI
Sbjct: 781 DNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRI 840

Query: 841 QSREEIEAAEESLSGGSPINVNYQHADFDPEAAPEELLAPTVQATS-DDGSEYPKVGRND 899
           QSREEIEAAEES++GGSPINVNYQHADFDPEAAPEELLAPTVQA S DDGSEY KVGRND
Sbjct: 841 QSREEIEAAEESMAGGSPINVNYQHADFDPEAAPEELLAPTVQAGSGDDGSEYAKVGRND 900

Query: 900 PCPCGSGKKYKQCHGKLA 917
           PCPCGSGKKYKQCHGKLA
Sbjct: 901 PCPCGSGKKYKQCHGKLA 918


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,690,037
Number of extensions: 111805
Number of successful extensions: 341
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 1
Length of query: 917
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 823
Effective length of database: 1,174,780
Effective search space: 966843940
Effective search space used: 966843940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)