BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0316.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309685|ref|YP_003773777.1| UDP-3-O-[3-hydroxymyristoyl] N-...   605   e-174

>gi|300309685|ref|YP_003773777.1| UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase [Herbaspirillum
           seropedicae SmR1]
          Length = 311

 Score =  605 bits (1559), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/311 (97%), Positives = 308/311 (99%)

Query: 1   MLKQRTIKNLVKTTGVGLHSGTKVELTLRPAAPDTGIIFRRIDLDPVVELPMIATGVGDT 60
           MLKQRTIKNLVKTTGVGLHSGTKVELTLRPAAPDTGIIFRRIDLDPVVELPM+ATGVGDT
Sbjct: 1   MLKQRTIKNLVKTTGVGLHSGTKVELTLRPAAPDTGIIFRRIDLDPVVELPMMATGVGDT 60

Query: 61  RMASTLTKDGAKVSTVEHLLSACAGLGIDNLYIDLTAEEIPIMDGSASSFVFLLQQAGLQ 120
           RMASTLTKDGAKVSTVEHLLSACAGLG+DNLYIDLTAEEIPIMDGSASSFVFLLQQAGLQ
Sbjct: 61  RMASTLTKDGAKVSTVEHLLSACAGLGLDNLYIDLTAEEIPIMDGSASSFVFLLQQAGLQ 120

Query: 121 EQNAPKKFIRVKKPVEVREGRGDKEKWARLEPYDGFRLKFFIEFNHPAVDGTGQVAEVDF 180
           EQ APKKFIRVKKPVEVREG GDKEKWARLEPYDGFRLKFFIEFNHPAVDGTGQVAEVDF
Sbjct: 121 EQEAPKKFIRVKKPVEVREGSGDKEKWARLEPYDGFRLKFFIEFNHPAVDGTGQVAEVDF 180

Query: 181 GIDSYVKEIARARTFGFMQDVETLRGMGLARGGSFENAIVMDEYRILNADGLRYDNEFVR 240
           GIDSYVKEIARARTFGFMQDVETLRGMGLARGGSFENAIVMDEYRILNADGLRYDNEFVR
Sbjct: 181 GIDSYVKEIARARTFGFMQDVETLRGMGLARGGSFENAIVMDEYRILNADGLRYDNEFVR 240

Query: 241 HKILDAIGDLYIIGHPLLASYDAHKSGHGLNNLLLRELLSQPDAYEIVSFDKLEQAPQTY 300
           HKILDAIGDLYIIGHPLLASYDAHKSGHGLNNLLLRELL+QPDAYEIVSFD LEQAPQTY
Sbjct: 241 HKILDAIGDLYIIGHPLLASYDAHKSGHGLNNLLLRELLAQPDAYEIVSFDTLEQAPQTY 300

Query: 301 VMQAQQEWALN 311
           VMQA+QEWALN
Sbjct: 301 VMQAKQEWALN 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 997,015
Number of extensions: 42977
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)