BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0314.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309683|ref|YP_003773775.1| cell division GTPase [Herbaspir...   712   0.0  

>gi|300309683|ref|YP_003773775.1| cell division GTPase
           [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/396 (96%), Positives = 389/396 (98%), Gaps = 1/396 (0%)

Query: 1   MEIDMVDNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALKQSKAHNVI 60
           MEIDMVDNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALKQSKAHNVI
Sbjct: 1   MEIDMVDNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALKQSKAHNVI 60

Query: 61  QIGDTGLGAGMQPEIGRRLAEETRARIEDSLRGAHMVFIAAGMGGGTGTGAAPVVAQVAK 120
           QIGDTGLGAGMQP++GRRLAEETRARIEDSLRGAHMVFIAAGMGGGTGTGAAPVVAQVAK
Sbjct: 61  QIGDTGLGAGMQPDVGRRLAEETRARIEDSLRGAHMVFIAAGMGGGTGTGAAPVVAQVAK 120

Query: 121 SLGALTVAVVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDDSMIEWL 180
           SLGALTVAVVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDDSMIEWL
Sbjct: 121 SLGALTVAVVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDDSMIEWL 180

Query: 181 SHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATAAGVDRARVAAEQ 240
           SHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATA+GVDRARVAAEQ
Sbjct: 181 SHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRARVAAEQ 240

Query: 241 AVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDDGM 300
           AVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDD M
Sbjct: 241 AVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDDSM 300

Query: 301 GDEIRVTVVATGLGRARKAVQLVQTPVMRTGTHNEPMMAVGGNLQQGAAQPAGAAFGGLK 360
           GDEIRVTVVATGLGRARKAVQLVQTPVMRTGTHNEP+MAVGG + QG AQ A  AFGGLK
Sbjct: 301 GDEIRVTVVATGLGRARKAVQLVQTPVMRTGTHNEPIMAVGGAMPQGGAQ-AAPAFGGLK 359

Query: 361 APAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD 396
           APAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD
Sbjct: 360 APAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,490
Number of extensions: 30876
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)