BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0309.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309678|ref|YP_003773770.1| UDP-N-acetylglucosamine-N-acety...   650   0.0  

>gi|300309678|ref|YP_003773770.1|
           UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/360 (89%), Positives = 338/360 (93%)

Query: 1   MNAPRKLLIMAAGTGGHIFPGLAIADTMRARGWQVSWLGTSHGMERELVPRHGVEMDSIV 60
           M+APRKLLIMAAGTGGHIFPGLAIADTMRARGW+VSWLGTSHGMERELVP HGVEMDSIV
Sbjct: 1   MSAPRKLLIMAAGTGGHIFPGLAIADTMRARGWEVSWLGTSHGMERELVPCHGVEMDSIV 60

Query: 61  FAGLRGKGLMHTLKGVWRLAASFLHCHAILGRRRPDVVLGMGGYVTVPGGMMARLRGKPL 120
           FAGLRGKGLMHT+KG WRL ASF  C AILGRRRPDVVLGMGGYVTVPGG MARLRGKPL
Sbjct: 61  FAGLRGKGLMHTVKGAWRLVASFFDCFAILGRRRPDVVLGMGGYVTVPGGAMARLRGKPL 120

Query: 121 VLVNADAALLLSNKTLTPMATRVLFGFPADFGKAAGKAEVTGNPVRKEIIALPPPAQRYA 180
           VLVNADAALLLSNK LTP+A +VLFGFPADFGKAAGKAEVTGNPVR+EI ALPPP QRYA
Sbjct: 121 VLVNADAALLLSNKALTPLADKVLFGFPADFGKAAGKAEVTGNPVRQEITALPPPVQRYA 180

Query: 181 GHSGVLKILVVGGSLGAKVLNDNVPAALAKLPAELRPQVTHQSGKQHIAALRAAYEAAGV 240
           G  G LKILVVGGSLGAKVLN+ VPAALA+LP E RPQVTHQSGKQ+I ALRAAYEAAGV
Sbjct: 181 GRRGPLKILVVGGSLGAKVLNETVPAALAQLPLEQRPQVTHQSGKQNIVALRAAYEAAGV 240

Query: 241 QAEVVDFIDDMPRRYAQADLVICRAGAITVSELTAAGVASVLVPLAVSTTSHQIDNARWM 300
           +AEV+DFI+DMPRRYA+ADLVICRAGAITVSELTAAGVASVLVPL VSTTS QI+NARWM
Sbjct: 241 EAEVLDFIEDMPRRYAEADLVICRAGAITVSELTAAGVASVLVPLVVSTTSQQIENARWM 300

Query: 301 AENKAAIHLPQRELTPEHLAGLLQKLDRAACQEMAQAAYEQGRRDANEAIARVLEGLVTP 360
           A+NKAAIHLPQREL+P+ LAGLLQKLDRAAC EMAQAAYEQGRRDANEAIARVLEGLVTP
Sbjct: 301 AKNKAAIHLPQRELSPDALAGLLQKLDRAACHEMAQAAYEQGRRDANEAIARVLEGLVTP 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,228,839
Number of extensions: 54421
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)